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MRPL28
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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:41.7 nTPM
GTEx:70.3 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:26.6 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 41.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 41.7
1916 Female, age 42, unknown 51.1
1851 Male, age 51, unknown 44.9
1889 Female, age 72, unknown 44.2
2241 Male, age 72, unknown 42.4
2699 Male, age 18, unknown 42.4
1941 Male, age 53, unknown 42.3
2583 Male, age 75, right hemisphere 38.0
2665 Male, age 74, both hemispheres 37.8
2590 Female, age 75, unknown 37.7
2409 Female, age 72, unknown 36.2

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.3
Samples: 139

Max nTPM: 131.5
Min nTPM: 33.1
Std nTPM: 17.8
Median nTPM: 67.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 131.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 118.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 112.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 112.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 111.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 110.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 101.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 99.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 97.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 97.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 95.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 95.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 94.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 94.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 92.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 91.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 91.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 90.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 90.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 90.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 89.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 89.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 87.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 86.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 86.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 86.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 85.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 85.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 83.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 81.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 80.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 79.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 79.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 79.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 78.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 78.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 78.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 77.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 77.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 77.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 77.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 76.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 76.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 75.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 75.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 74.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 74.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 74.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 74.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 73.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 73.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 72.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 72.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 72.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 72.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 71.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 71.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 70.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 69.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 69.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 69.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 68.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 68.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 68.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 68.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 67.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 67.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 66.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 66.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 66.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 66.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 65.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 65.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 65.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 65.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 65.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 64.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 64.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 64.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 64.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 64.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 64.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 63.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 63.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 63.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 63.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 62.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 62.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 62.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 61.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 61.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 61.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 60.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 60.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 60.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 60.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 59.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 59.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 58.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 58.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 58.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 58.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 58.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 58.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 57.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 57.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 55.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 55.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 55.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 55.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 54.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 53.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 53.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 53.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 53.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 52.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 51.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 51.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 50.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 49.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 48.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 48.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 48.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 48.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 46.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 46.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 45.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 45.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 43.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 41.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 39.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 37.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 36.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 33.1
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.0
FF:10158-103A5 76 years, female 19.0

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 41.4
Min nTPM: 16.8
Sample A Female 41.4
Sample B Female 20.5
Sample C Male 27.6
Sample D Male 16.8

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