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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:4413.7 nTPM
HPA:4413.7 nTPM
FANTOM5:624.6 Scaled Tags Per Million
Pig:2087.3 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 4413.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 4340.8
1984 Male, age 76, both hemispheres 4354.2
2188 Female, age 91, both hemispheres 4349.8
2301 Female, age 85, both hemispheres 4333.8
2090 Male, age 80, both hemispheres 4325.5
Dorsal cochlear nucleus
nTPM: 4344.9
2370 Male, age 61, both hemispheres 4410.8
2058 Male, age 76, both hemispheres 4381.4
2802 Male, age 74, right hemisphere 4364.4
2187 Female, age 91, both hemispheres 4322.0
2378 Male, age 80, both hemispheres 4245.8
Dorsal tegmental nucleus
nTPM: 4351.2
2083 Male, age 80, both hemispheres 4552.2
1936 Male, age 76, left hemisphere 4425.1
2326 Male, age 74, both hemispheres 4322.9
2358 Male, age 61, both hemispheres 4104.8
Dorsolateral tegmental area
nTPM: 4371.7
2751 Female, age 85, both hemispheres 4518.0
2654 Male, age 80, both hemispheres 4471.8
2141 Male, age 76, both hemispheres 4339.8
2360 Male, age 74, both hemispheres 4300.6
2337 Male, age 61, both hemispheres 4228.5
Kolliker-Fuse nucleus
nTPM: 4391.3
2315 Male, age 76, right hemisphere 4453.4
2163 Male, age 80, both hemispheres 4415.9
2793 Female, age 91, left hemisphere 4304.4
Lateral lemniscal nuclei
nTPM: 4274.4
2169 Male, age 76, both hemispheres 4357.1
2746 Female, age 85, left hemisphere 4300.5
2320 Female, age 91, left hemisphere 4258.7
2036 Male, age 80, both hemispheres 4248.4
2453 Male, age 74, right hemisphere 4207.3
Lateral parabrachial nucleus
nTPM: 4367.0
2139 Female, age 85, right hemisphere 4454.6
2792 Male, age 76, both hemispheres 4431.2
2013 Male, age 80, both hemispheres 4351.7
2790 Male, age 61, both hemispheres 4230.4
Lateral vestibular nucleus
nTPM: 4413.7
2184 Male, age 76, both hemispheres 4466.3
2311 Male, age 80, both hemispheres 4361.2
Locus coeruleus
nTPM: 4335.1
2317 Female, age 72, unknown 4440.9
2014 Male, age 55, unknown 4376.9
2123 Female, age 91, both hemispheres 4342.7
2162 Male, age 80, both hemispheres 4336.3
1980 Male, age 76, both hemispheres 4332.2
2788 Male, age 74, unknown 4288.5
2720 Male, age 74, both hemispheres 4228.0
Medial olivary nucleus
nTPM: 4344.6
2138 Female, age 91, both hemispheres 4530.5
1962 Male, age 76, both hemispheres 4402.8
1943 Male, age 61, both hemispheres 4234.9
2851 Male, age 80, both hemispheres 4210.1
Medial parabrachial nucleus
nTPM: 4386.8
2463 Female, age 85, right hemisphere 4481.9
2170 Female, age 91, both hemispheres 4449.8
2156 Male, age 61, both hemispheres 4378.6
2786 Male, age 76, both hemispheres 4361.0
2854 Male, age 80, both hemispheres 4262.7
Medial periolivary nuclei
nTPM: 4280.7
2063 Male, age 76, both hemispheres 4384.1
2791 Male, age 74, right hemisphere 4302.9
2171 Female, age 85, both hemispheres 4256.4
2081 Male, age 80, both hemispheres 4237.8
2458 Female, age 91, both hemispheres 4222.5
Motor facial nucleus
nTPM: 4286.9
2062 Male, age 76, both hemispheres 4476.9
2126 Male, age 61, both hemispheres 4322.5
2795 Female, age 91, both hemispheres 4310.1
2365 Male, age 74, right hemisphere 4246.9
2327 Male, age 80, both hemispheres 4193.2
2697 Female, age 85, both hemispheres 4171.9
Motor trigeminal nucleus
nTPM: 4300.2
2309 Male, age 76, both hemispheres 4400.1
2079 Male, age 80, both hemispheres 4340.8
2335 Male, age 61, both hemispheres 4290.0
2321 Female, age 91, both hemispheres 4239.5
2560 Male, age 74, both hemispheres 4230.9
Nuclei of the trapezoid body
nTPM: 4341.5
1983 Male, age 76, both hemispheres 4507.5
2159 Male, age 61, both hemispheres 4322.1
2368 Female, age 91, both hemispheres 4296.8
2735 Female, age 85, both hemispheres 4295.5
2166 Male, age 80, both hemispheres 4285.4
Paramedian reticular nucleus
nTPM: 4312.1
2057 Male, age 80, both hemispheres 4378.6
2313 Male, age 61, both hemispheres 4362.3
2050 Female, age 85, both hemispheres 4276.5
2052 Male, age 76, both hemispheres 4231.2
Pontine nuclei
nTPM: 4326.8
1863 Male, age 55, unknown 4424.9
1968 Male, age 76, left hemisphere 4397.6
2787 Female, age 85, both hemispheres 4349.9
2319 Female, age 91, both hemispheres 4320.3
2115 Male, age 80, left hemisphere 4300.3
2454 Male, age 74, left hemisphere 4287.7
2727 Male, age 61, right hemisphere 4280.0
2109 Female, age 72, unknown 4254.0
Pontine raphe nucleus
nTPM: 4386.2
2853 Male, age 76, midline 4409.2
2122 Female, age 85, midline 4363.3
Posteroventral cochlear nucleus
nTPM: 4405.2
2371 Male, age 61, both hemispheres 4511.0
2135 Female, age 91, both hemispheres 4414.9
2752 Female, age 85, both hemispheres 4391.6
2341 Male, age 80, both hemispheres 4354.8
2070 Male, age 76, both hemispheres 4353.7
Principal sensory trigeminal nucleus
nTPM: 4322.0
2324 Male, age 76, both hemispheres 4401.5
2158 Male, age 61, both hemispheres 4306.2
2008 Male, age 80, left hemisphere 4296.7
2367 Female, age 91, left hemisphere 4283.7
Reticular pontine nucleus, caudal
nTPM: 4332.3
2092 Male, age 76, both hemispheres 4456.8
2457 Female, age 91, both hemispheres 4314.0
2559 Male, age 74, both hemispheres 4301.0
2332 Male, age 80, right hemisphere 4257.4
Reticular pontine nucleus, oral
nTPM: 4373.6
1939 Male, age 80, both hemispheres 4527.4
2167 Male, age 76, both hemispheres 4428.2
2012 Female, age 85, both hemispheres 4354.4
2366 Female, age 91, both hemispheres 4319.4
2361 Male, age 74, both hemispheres 4238.8
Reticulotegmental nucleus
nTPM: 4370.0
2325 Male, age 76, both hemispheres 4410.4
2333 Male, age 80, both hemispheres 4405.7
2322 Female, age 91, both hemispheres 4351.3
2452 Male, age 74, both hemispheres 4312.7
Spinal trigeminal nucleus, oral
nTPM: 4344.9
1978 Male, age 76, both hemispheres 4377.4
2737 Female, age 85, both hemispheres 4364.8
2164 Male, age 80, both hemispheres 4292.5
Subcoeruleus area
nTPM: 4378.5
2369 Female, age 85, left hemisphere 4467.1
2451 Male, age 74, both hemispheres 4410.0
1958 Male, age 80, both hemispheres 4378.4
2089 Male, age 76, left hemisphere 4349.0
2323 Female, age 91, left hemisphere 4288.3
Superior olive
nTPM: 4290.5
2020 Male, age 76, both hemispheres 4413.3
2364 Male, age 74, right hemisphere 4306.4
1875 Female, age 85, both hemispheres 4263.3
2329 Male, age 80, right hemisphere 4241.9
2561 Female, age 91, both hemispheres 4227.8
Superior vestibular nucleus
nTPM: 4403.6
2061 Male, age 76, both hemispheres 4421.8
2383 Male, age 74, both hemispheres 4413.4
2015 Male, age 80, both hemispheres 4375.6
Ventral periolivary nuclei
nTPM: 4279.5
2023 Male, age 76, both hemispheres 4368.1
2165 Male, age 80, both hemispheres 4342.6
2794 Female, age 91, left hemisphere 4208.2
2130 Female, age 85, both hemispheres 4199.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 4293.3
2359 Male, age 61, both hemispheres 4414.0
1959 Male, age 76, both hemispheres 4332.2
2456 Female, age 91, both hemispheres 4293.6
2161 Male, age 80, both hemispheres 4269.3
2449 Male, age 74, both hemispheres 4236.2
2840 Female, age 85, both hemispheres 4214.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 624.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 624.6
FF:10165-103B3 76 years, female 646.4
FF:10182-103D2 60 years, female 602.8
Pons
Scaled Tags Per Million: 352.6
FF:10033-101E6 18-54 years, mixed 352.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 2087.3
Pig sample Sample description nTPM
Pons
nTPM: 2087.3
Samples: 4

Max nTPM: 2437.5
Min nTPM: 1294.4
Sample A Female 2374.2
Sample B Female 1294.4
Sample C Male 2437.5
Sample D Male 2243.1

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