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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4335.2 nTPM
HPA:4335.2 nTPM
GTEx:1452.6 nTPM
FANTOM5:378.1 Scaled Tags Per Million
Pig:1765.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 4335.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 4289.9
2194 Female, age 79, both hemispheres 4385.8
1981 Female, age 72, midline 4384.0
2048 Male, age 55, midline 4281.3
2816 Male, age 47, midline 4218.4
2565 Male, age 75, midline 4180.1
Cervical spinal cord, dorsal horn
nTPM: 4335.2
2173 Female, age 72, unknown 4574.1
2296 Male, age 66, both hemispheres 4375.0
1877 Male, age 55, unknown 4331.4
2069 Male, age 47, both hemispheres 4302.7
2297 Male, age 75, both hemispheres 4248.7
2721 Male, age 90, both hemispheres 4179.5
Cervical spinal cord, ventral horn
nTPM: 4322.4
2068 Male, age 55, unknown 4389.3
2480 Male, age 75, both hemispheres 4362.4
2820 Female, age 79, both hemispheres 4320.9
2295 Male, age 66, both hemispheres 4319.5
2809 Male, age 90, both hemispheres 4282.5
2098 Female, age 72, unknown 4259.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1452.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1452.6
Samples: 159

Max nTPM: 5113.4
Min nTPM: 378.2
Std nTPM: 655.7
Median nTPM: 1294.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 5113.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 3361.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3217.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3126.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3088.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2820.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2759.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2493.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2489.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2485.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2482.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2454.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2413.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2340.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2331.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2296.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2282.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2251.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2226.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2225.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2197.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2171.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2150.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2147.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2125.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2088.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2062.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2047.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2025.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1999.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1936.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1934.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1903.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1878.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1873.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1832.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1815.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1757.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1727.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1722.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1719.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1714.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1689.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1674.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1665.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1663.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1652.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1646.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1639.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1619.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1610.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1606.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1606.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1598.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1584.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1532.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1531.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1511.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1491.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1490.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1488.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1477.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1466.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1459.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1451.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1449.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1443.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1440.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1403.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1375.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1373.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1358.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1345.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1341.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1340.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1338.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1330.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1319.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1313.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1294.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1284.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1277.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1271.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1267.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1259.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1247.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1229.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1228.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1225.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1222.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1214.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1212.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1206.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1204.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1199.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1180.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1175.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1169.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1167.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1164.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1161.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1156.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1153.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1146.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1142.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1142.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1139.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1134.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1133.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1127.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1113.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1098.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1092.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1089.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1076.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1075.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1046.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1045.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1034.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1020.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 991.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 987.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 976.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 956.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 952.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 940.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 939.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 938.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 937.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 932.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 917.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 893.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 875.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 837.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 833.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 827.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 805.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 804.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 790.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 786.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 786.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 780.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 770.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 762.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 759.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 757.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 743.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 736.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 734.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 733.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 704.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 657.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 646.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 625.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 613.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 587.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 556.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 451.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 378.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 378.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 378.1
FF:10159-103A6 76 years, female 404.2
FF:10181-103D1 60 years, female 352.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1765.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1300.0
Samples: 4

Max nTPM: 1339.4
Min nTPM: 1245.4
Sample A Female 1339.4
Sample B Female 1245.4
Sample C Male 1328.4
Sample D Male 1286.9
Ventral spinal cord
nTPM: 1765.8
Samples: 4

Max nTPM: 2182.6
Min nTPM: 1431.7
Sample A Female 1639.5
Sample B Female 1809.3
Sample C Male 2182.6
Sample D Male 1431.7

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