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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4616.8 nTPM
HPA:4616.8 nTPM
GTEx:4233.5 nTPM
FANTOM5:909.7 Scaled Tags Per Million
Pig:2324.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 4616.8
Sample id Sample description nTPM
Amygdala
nTPM: 4616.8
2514 Male, age 75, right hemisphere 4851.8
2695 Female, age 67, right hemisphere 4580.7
2814 Male, age 76, right hemisphere 4570.2
2517 Female, age 94, left hemisphere 4563.5
1987 Female, age 91, left hemisphere 4517.8
Basal amygdala
nTPM: 4516.6
2609 Male, age 75, right hemisphere 5047.7
2110 Male, age 80, left hemisphere 4587.1
1955 Male, age 76, both hemispheres 4492.1
2243 Female, age 91, right hemisphere 4429.9
2685 Female, age 94, left hemisphere 4334.6
2827 Female, age 67, right hemisphere 4208.0
Central amygdala
nTPM: 4574.1
2515 Male, age 75, right hemisphere 4786.6
1905 Male, age 76, both hemispheres 4642.9
2826 Female, age 94, left hemisphere 4583.9
2239 Male, age 80, left hemisphere 4513.1
2701 Female, age 91, right hemisphere 4344.2
Corticomedial amygdala
nTPM: 4537.6
2428 Male, age 75, right hemisphere 4975.0
2829 Male, age 80, left hemisphere 4688.1
2429 Female, age 94, left hemisphere 4506.6
2242 Female, age 91, right hemisphere 4385.2
2240 Male, age 76, both hemispheres 4379.9
2535 Female, age 67, right hemisphere 4290.6
Lateral amygdala
nTPM: 4523.0
2516 Male, age 75, right hemisphere 5013.0
2256 Male, age 80, left hemisphere 4570.4
2534 Female, age 94, left hemisphere 4492.8
1883 Male, age 76, both hemispheres 4491.2
2255 Female, age 91, right hemisphere 4403.8
2830 Female, age 67, right hemisphere 4166.8
Stria terminalis, bed nucleus
nTPM: 4327.0
1974 Female, age 91, both hemispheres 4364.1
2486 Female, age 94, both hemispheres 4352.2
2201 Male, age 74, unknown 4264.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4233.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 4233.5
Samples: 152

Max nTPM: 13716.6
Min nTPM: 185.9
Std nTPM: 2056.5
Median nTPM: 3806.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 13716.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 12177.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 11817.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 10967.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 10790.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 9811.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 7564.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 7459.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 6923.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6807.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6645.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 6534.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 6491.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 6438.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 6376.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6211.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 6187.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 6084.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 6029.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 6018.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 5999.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 5938.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 5865.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 5836.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 5825.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 5821.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 5730.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 5686.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 5632.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 5484.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 5436.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5346.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 5304.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 5211.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 5187.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 5147.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 5072.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 5049.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 4959.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 4953.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 4949.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 4936.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 4918.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 4884.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 4869.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 4850.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 4842.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 4753.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 4737.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 4726.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 4722.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 4674.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 4666.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 4645.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4628.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 4561.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 4548.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 4529.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 4492.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 4468.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 4390.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4347.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 4308.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4258.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 4249.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 4231.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 4223.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 4166.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 4077.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 3970.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 3961.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3922.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3865.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3858.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 3839.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 3830.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3782.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3779.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3769.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 3758.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 3752.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3746.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3740.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3649.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3607.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3601.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3527.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3519.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3516.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 3503.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 3501.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3475.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 3458.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 3452.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3396.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3336.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 3310.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3278.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3277.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 3264.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 3233.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3229.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3226.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 3190.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3170.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 3168.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3162.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 3118.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3076.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2981.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2977.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2975.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2963.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2935.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2907.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2886.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2871.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2859.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2815.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2795.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2734.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2725.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2705.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2632.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2616.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2582.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2564.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2501.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2493.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2468.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2402.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2340.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2302.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2297.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2272.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2221.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2164.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2164.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2141.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2102.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 2020.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1992.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1926.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1902.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1849.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1768.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1733.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1690.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1436.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1291.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1262.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 185.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 909.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 909.7
FF:10151-102I7 76 years, female 909.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2324.6
Pig sample Sample description nTPM
Amygdala
nTPM: 2324.6
Samples: 4

Max nTPM: 3295.3
Min nTPM: 1459.1
Sample A Female 3295.3
Sample B Female 2167.3
Sample C Male 2376.6
Sample D Male 1459.1

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