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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4826.7 nTPM
HPA:4826.7 nTPM
FANTOM5:800.9 Scaled Tags Per Million
Pig:2255.0 nTPM

THALAMUS - HPA Brain RNA-seq
Max nTPM 4826.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 4297.9
2497 Male, age 66, unknown 4442.9
2032 Female, age 42, unknown 4418.1
2396 Male, age 61, right hemisphere 4032.6
Centromedial thalamic nucleus
nTPM: 4511.6
2401 Male, age 76, right hemisphere 4611.8
2279 Female, age 85, left hemisphere 4411.4
Habenula
nTPM: 4505.6
2203 Male, age 61, left hemisphere 4605.8
1957 Male, age 80, both hemispheres 4555.8
2252 Male, age 62, unknown 4462.0
2276 Male, age 66, unknown 4398.8
Lateral geniculate body
nTPM: 4625.3
2857 Male, age 74, right hemisphere 4897.9
2399 Male, age 61, left hemisphere 4792.4
2575 Female, age 94, right hemisphere 4671.6
2035 Female, age 72, unknown 4602.9
2106 Female, age 67, right hemisphere 4585.9
2659 Male, age 66, unknown 4535.2
2841 Male, age 80, both hemispheres 4477.9
1953 Male, age 62, unknown 4439.0
Lateral thalamic nuclei
nTPM: 4594.2
2573 Female, age 94, left hemisphere 4910.2
2661 Female, age 72, unknown 4617.5
1903 Male, age 76, left hemisphere 4546.2
2765 Female, age 67, both hemispheres 4527.6
2577 Male, age 74, both hemispheres 4369.4
Medial dorsal thalamic nucleus
nTPM: 4600.3
2572 Female, age 94, right hemisphere 5417.1
1810 Male, age 48, unknown 4674.9
1859 Male, age 76, both hemispheres 4662.3
2492 Male, age 75, right hemisphere 4633.4
2283 Male, age 80, right hemisphere 4608.7
2576 Male, age 74, both hemispheres 4587.9
2498 Male, age 66, unknown 4531.6
2026 Male, age 62, unknown 4517.0
1971 Male, age 61, right hemisphere 4456.2
2402 Female, age 67, both hemispheres 4454.1
2660 Female, age 72, unknown 4440.0
1930 Female, age 42, unknown 4427.8
2039 Female, age 72, unknown 4392.5
Medial geniculate body
nTPM: 4614.0
2650 Female, age 94, left hemisphere 4995.7
2657 Male, age 74, right hemisphere 4710.3
1811 Female, age 42, unknown 4581.6
2571 Male, age 75, right hemisphere 4549.4
2207 Male, age 80, right hemisphere 4535.6
2217 Female, age 72, unknown 4517.0
2049 Male, age 76, both hemispheres 4408.3
Nucleus reuniens
nTPM: 4367.8
2205 Male, age 80, left hemisphere 4453.8
2212 Female, age 67, left hemisphere 4357.0
2210 Female, age 85, left hemisphere 4292.5
Nucleus rhomboideus
nTPM: 4369.5
2206 Male, age 80, both hemispheres 4559.8
2213 Female, age 67, left hemisphere 4281.5
2280 Female, age 85, left hemisphere 4267.3
Posterior thalamic nucleus
nTPM: 4826.7
2649 Female, age 94, both hemispheres 5264.2
2655 Male, age 74, right hemisphere 4856.8
2266 Male, age 76, right hemisphere 4742.6
2495 Female, age 67, right hemisphere 4443.4
Pulvinar
nTPM: 4633.6
1932 Male, age 80, right hemisphere 4840.0
2398 Male, age 61, left hemisphere 4810.3
2724 Male, age 74, right hemisphere 4672.5
2499 Male, age 66, unknown 4668.9
1929 Male, age 48, unknown 4605.3
2582 Female, age 72, unknown 4597.3
2214 Male, age 76, right hemisphere 4562.1
2496 Female, age 67, right hemisphere 4551.8
1899 Female, age 42, unknown 4541.3
1972 Male, age 62, unknown 4486.1
Subthalamic nucleus
nTPM: 4396.9
2282 Male, age 61, both hemispheres 4722.1
2124 Male, age 62, unknown 4481.2
2056 Female, age 72, unknown 4435.6
2275 Male, age 66, unknown 4382.2
2216 Male, age 48, unknown 4371.2
2406 Female, age 72, unknown 4307.4
2779 Female, age 42, unknown 4295.2
2658 Male, age 74, both hemispheres 4180.1
Ventral posterolateral thalamic nucleus
nTPM: 4606.7
2197 Male, age 80, both hemispheres 4781.5
2740 Male, age 76, right hemisphere 4727.7
2397 Male, age 61, right hemisphere 4630.2
2570 Male, age 75, right hemisphere 4621.3
2581 Female, age 72, unknown 4515.7
2578 Male, age 74, both hemispheres 4363.9
Ventral posteromedial thalamic nucleus
nTPM: 4652.0
2281 Male, age 75, right hemisphere 4792.4
2758 Male, age 80, both hemispheres 4781.8
2127 Male, age 76, right hemisphere 4661.5
2202 Male, age 61, left hemisphere 4637.1
2653 Male, age 74, both hemispheres 4387.0
Ventral thalamic nuclei
nTPM: 4531.2
1860 Male, age 76, both hemispheres 4681.0
2858 Female, age 72, unknown 4650.6
2285 Male, age 62, unknown 4573.9
2580 Male, age 66, unknown 4559.8
2204 Male, age 80, both hemispheres 4536.7
2291 Female, age 72, unknown 4494.9
1912 Female, age 42, unknown 4472.3
1845 Male, age 48, unknown 4461.8
2652 Male, age 74, left hemisphere 4349.7
Ventromedial nucleus
nTPM: 4309.9
1982 Female, age 72, unknown 4373.8
1822 Female, age 42, unknown 4246.0
Zona incerta
nTPM: 4287.9
2208 Male, age 80, right hemisphere 4465.3
2403 Male, age 62, unknown 4270.9
2215 Male, age 66, unknown 4265.1
2663 Female, age 72, unknown 4248.5
2822 Male, age 74, right hemisphere 4189.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 800.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 800.9
FF:10154-103A1 76 years, female 800.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2255.0
Pig sample Sample description nTPM
Thalamus
nTPM: 2255.0
Samples: 4

Max nTPM: 3260.5
Min nTPM: 1438.3
Sample A Female 3260.5
Sample B Female 1563.9
Sample C Male 2757.3
Sample D Male 1438.3

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