MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.1 nTPM
HPA:95.1 nTPM
GTEx:122.2 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:1.8 nTPM
Mouse:35.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.3
1870 Female, age 42, unknown 98.4
2411 Female, age 72, unknown 93.0
1830 Male, age 51, unknown 92.4
2019 Male, age 18, unknown 92.4
1833 Male, age 53, unknown 92.1
1827 Male, age 72, unknown 88.7
2219 Male, age 76, both hemispheres 86.4
2586 Male, age 75, left hemisphere 83.6
2828 Female, age 72, unknown 83.6
2666 Male, age 74, left hemisphere 82.6
Dorsal raphe nucleus
nTPM: 90.8
2750 Male, age 76, both hemispheres 97.3
2298 Female, age 72, unknown 89.7
2016 Female, age 72, unknown 89.6
1828 Male, age 53, unknown 88.8
2047 Male, age 72, unknown 88.7
Inferior colliculus
nTPM: 87.3
2097 Female, age 72, unknown 90.8
1890 Male, age 53, unknown 87.9
1848 Female, age 42, unknown 86.3
2849 Male, age 72, unknown 84.0
Median raphe nucleus
nTPM: 94.4
2220 Male, age 76, midline 94.4
Pedunculopontine tegmental nucleus
nTPM: 93.8
2338 Male, age 61, both hemispheres 94.6
1921 Female, age 85, both hemispheres 93.9
2334 Male, age 80, both hemispheres 93.0
Periaquaductal grey, anterior
nTPM: 89.2
1947 Male, age 18, unknown 95.6
2502 Female, age 75, unknown 87.6
1795 Male, age 51, unknown 84.4
Periaquaductal grey, dorsal
nTPM: 84.7
2850 Male, age 76, both hemispheres 86.9
1831 Male, age 72, unknown 85.1
2464 Female, age 72, unknown 84.8
1840 Male, age 53, unknown 82.0
Periaquaductal grey, lateral
nTPM: 86.0
2272 Male, age 74, both hemispheres 89.0
2053 Male, age 18, unknown 87.1
2140 Male, age 76, both hemispheres 82.0
Pretectal area
nTPM: 90.7
1944 Female, age 72, unknown 96.7
1817 Female, age 42, unknown 95.5
2667 Female, age 75, unknown 93.9
1815 Male, age 53, unknown 93.6
2007 Male, age 72, unknown 93.2
2224 Female, age 72, unknown 90.4
1816 Male, age 51, unknown 89.8
2273 Male, age 74, both hemispheres 89.1
2316 Male, age 76, right hemisphere 85.7
2407 Male, age 75, both hemispheres 85.3
2825 Male, age 18, unknown 84.7
Red nucleus
nTPM: 95.1
1821 Female, age 72, unknown 103.7
1904 Male, age 53, unknown 100.7
1865 Male, age 51, unknown 100.6
1954 Female, age 42, unknown 98.6
2823 Male, age 76, right hemisphere 97.7
2503 Female, age 72, unknown 95.6
2769 Male, age 72, unknown 93.5
2725 Female, age 75, unknown 93.2
2227 Male, age 72, unknown 92.3
2785 Male, age 18, unknown 92.2
2588 Male, age 74, left hemisphere 87.6
2584 Male, age 75, left hemisphere 86.0
Substantia nigra
nTPM: 93.5
1916 Female, age 42, unknown 98.3
1889 Female, age 72, unknown 98.1
1851 Male, age 51, unknown 97.5
2241 Male, age 72, unknown 97.1
1941 Male, age 53, unknown 93.6
2699 Male, age 18, unknown 92.9
2590 Female, age 75, unknown 91.0
2583 Male, age 75, right hemisphere 90.7
2409 Female, age 72, unknown 88.7
2665 Male, age 74, both hemispheres 86.7
Superior colliculus
nTPM: 89.5
1895 Male, age 76, right hemisphere 95.9
1913 Female, age 42, unknown 92.4
1995 Male, age 72, unknown 92.4
2587 Male, age 74, left hemisphere 92.0
2668 Female, age 75, unknown 91.2
2087 Female, age 72, unknown 89.0
2261 Male, age 18, unknown 87.4
1839 Male, age 51, unknown 86.3
1796 Male, age 53, unknown 85.9
2664 Male, age 75, both hemispheres 82.0
Ventral tegmental area
nTPM: 92.7
2218 Male, age 76, both hemispheres 96.7
2410 Female, age 72, unknown 96.1
1915 Female, age 42, unknown 93.8
2223 Female, age 72, unknown 91.1
1942 Male, age 51, unknown 89.4
2021 Male, age 53, unknown 89.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.2
Samples: 139

Max nTPM: 219.0
Min nTPM: 73.9
Std nTPM: 23.1
Median nTPM: 121.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 219.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 201.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 181.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 165.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 164.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 160.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 159.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 158.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 157.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 156.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 153.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.8
Pig sample Sample description nTPM
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 1.7
Sample C Male 1.6
Sample D Male 1.7
Periaqueductal gray
nTPM: 1.8
Samples: 3

Max nTPM: 3.1
Min nTPM: 0.9
Sample B Female 3.1
Sample C Male 0.9
Sample D Male 1.4
Substantia nigra
nTPM: 1.3
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 1.0
Sample C Male 1.2
Sample D Male 2.3
Superior colliculi
nTPM: 1.0
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.0
Sample C Male 1.8
Sample D Male 0.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 34.0
Sample A Male 34.5
Sample B Male 38.4
Sample C Female 34.0
Sample D Female 36.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70429130 Antisense, RP_050614_01_A10, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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