We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPLP0
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RPLP0
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:561.3 nTPM
HPA:561.3 nTPM
GTEx:442.7 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:250.0 nTPM
Mouse:371.1 nTPM
Allen mouse:8.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 561.3
Sample id Sample description nTPM
Amygdala
nTPM: 559.0
2695 Female, age 67, right hemisphere 578.1
2514 Male, age 75, right hemisphere 562.4
2517 Female, age 94, left hemisphere 560.7
1987 Female, age 91, left hemisphere 557.7
2814 Male, age 76, right hemisphere 536.3
Basal amygdala
nTPM: 550.9
2827 Female, age 67, right hemisphere 583.6
2609 Male, age 75, right hemisphere 564.5
2110 Male, age 80, left hemisphere 548.8
2685 Female, age 94, left hemisphere 541.4
2243 Female, age 91, right hemisphere 538.1
1955 Male, age 76, both hemispheres 528.9
Central amygdala
nTPM: 559.3
2826 Female, age 94, left hemisphere 613.9
2515 Male, age 75, right hemisphere 581.9
2239 Male, age 80, left hemisphere 543.5
1905 Male, age 76, both hemispheres 531.2
2701 Female, age 91, right hemisphere 526.3
Corticomedial amygdala
nTPM: 548.6
2428 Male, age 75, right hemisphere 584.7
2535 Female, age 67, right hemisphere 557.5
2242 Female, age 91, right hemisphere 548.7
2829 Male, age 80, left hemisphere 543.4
2240 Male, age 76, both hemispheres 534.1
2429 Female, age 94, left hemisphere 523.2
Lateral amygdala
nTPM: 561.3
2830 Female, age 67, right hemisphere 606.9
2534 Female, age 94, left hemisphere 567.5
2256 Male, age 80, left hemisphere 562.7
2516 Male, age 75, right hemisphere 560.6
2255 Female, age 91, right hemisphere 537.6
1883 Male, age 76, both hemispheres 532.4
Stria terminalis, bed nucleus
nTPM: 518.0
1974 Female, age 91, both hemispheres 523.7
2201 Male, age 74, unknown 522.0
2486 Female, age 94, both hemispheres 508.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 442.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 442.7
Samples: 152

Max nTPM: 929.2
Min nTPM: 202.6
Std nTPM: 126.2
Median nTPM: 409.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 929.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 898.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 856.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 818.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 761.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 730.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 727.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 706.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 687.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 684.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 672.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 660.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 658.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 655.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 640.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 627.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 623.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 597.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 587.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 577.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 574.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 550.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 549.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 545.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 544.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 532.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 532.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 531.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 525.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 520.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 512.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 509.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 493.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 491.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 490.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 487.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 483.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 482.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 477.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 477.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 476.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 475.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 474.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 472.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 472.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 472.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 467.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 466.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 466.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 453.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 450.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 449.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 445.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 444.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 443.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 441.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 440.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 439.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 437.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 437.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 433.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 433.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 433.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 430.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 429.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 429.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 426.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 425.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 423.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 420.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 419.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 417.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 413.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 413.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 409.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 409.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 409.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 408.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 408.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 406.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 406.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 405.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 402.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 401.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 399.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 397.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 396.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 394.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 394.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 394.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 392.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 391.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 391.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 389.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 386.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 384.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 383.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 381.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 380.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 377.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 377.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 377.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 376.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 376.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 375.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 375.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 372.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 372.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 371.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 368.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 367.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 366.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 365.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 365.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 364.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 363.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 362.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 361.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 359.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 358.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 357.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 355.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 354.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 354.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 352.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 351.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 344.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 342.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 342.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 337.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 336.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 333.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 330.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 327.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 325.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 325.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 324.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 322.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 319.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 318.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 316.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 315.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 304.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 302.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 288.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 287.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 281.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 272.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 271.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 266.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 258.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 202.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 28.2
FF:10151-102I7 76 years, female 28.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 250.0
Pig sample Sample description nTPM
Amygdala
nTPM: 250.0
Samples: 4

Max nTPM: 294.0
Min nTPM: 149.6
Sample A Female 294.0
Sample B Female 294.0
Sample C Male 262.5
Sample D Male 149.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 371.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 371.1
Samples: 4

Max nTPM: 404.0
Min nTPM: 343.7
Sample A Male 343.7
Sample B Male 368.4
Sample C Female 404.0
Sample D Female 368.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.7
68795446 Antisense, RP_041130_01_F11, Mouse strain C57BL/6J (56 days, male) 10.4
74047927 Antisense, RP_051214_02_D12, Mouse strain C57BL/6J (56 days, male) 7.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.