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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:603.4 nTPM
HPA:603.4 nTPM
GTEx:507.3 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:517.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 603.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 571.8
2565 Male, age 75, midline 609.5
1981 Female, age 72, midline 588.1
2048 Male, age 55, midline 559.3
2816 Male, age 47, midline 556.6
2194 Female, age 79, both hemispheres 545.7
Cervical spinal cord, dorsal horn
nTPM: 568.7
2173 Female, age 72, unknown 611.6
2069 Male, age 47, both hemispheres 584.9
2296 Male, age 66, both hemispheres 577.0
1877 Male, age 55, unknown 574.4
2721 Male, age 90, both hemispheres 541.1
2297 Male, age 75, both hemispheres 523.3
Cervical spinal cord, ventral horn
nTPM: 603.4
2809 Male, age 90, both hemispheres 655.8
2480 Male, age 75, both hemispheres 640.5
2098 Female, age 72, unknown 633.5
2295 Male, age 66, both hemispheres 581.8
2068 Male, age 55, unknown 575.5
2820 Female, age 79, both hemispheres 533.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 507.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 507.3
Samples: 159

Max nTPM: 1151.1
Min nTPM: 205.6
Std nTPM: 134.3
Median nTPM: 486.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1151.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 962.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 942.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 918.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 912.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 770.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 755.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 753.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 745.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 699.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 690.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 687.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 682.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 679.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 666.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 662.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 661.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 658.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 653.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 648.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 626.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 625.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 621.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 620.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 619.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 618.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 617.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 613.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 607.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 595.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 591.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 590.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 583.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 582.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 579.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 576.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 572.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 568.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 565.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 562.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 562.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 557.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 557.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 549.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 548.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 544.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 543.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 541.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 541.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 539.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 539.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 534.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 532.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 529.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 529.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 525.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 525.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 524.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 523.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 519.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 517.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 516.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 515.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 514.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 511.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 510.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 509.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 505.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 503.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 502.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 500.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 500.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 499.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 498.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 495.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 495.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 495.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 491.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 490.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 486.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 482.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 480.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 479.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 477.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 477.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 476.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 473.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 471.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 470.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 470.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 468.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 467.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 467.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 467.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 465.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 465.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 463.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 462.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 461.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 461.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 460.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 456.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 455.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 455.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 453.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 453.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 451.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 450.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 448.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 443.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 439.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 438.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 434.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 432.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 430.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 429.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 426.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 424.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 424.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 423.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 423.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 423.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 422.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 421.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 421.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 419.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 417.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 414.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 412.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 411.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 409.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 406.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 402.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 401.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 400.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 395.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 394.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 379.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 374.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 373.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 373.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 371.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 368.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 366.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 362.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 356.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 356.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 356.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 351.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 347.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 341.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 335.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 335.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 302.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 293.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 274.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 268.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 252.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 205.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 27.0
FF:10159-103A6 76 years, female 27.4
FF:10181-103D1 60 years, female 26.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 517.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 517.5
Samples: 4

Max nTPM: 824.1
Min nTPM: 336.0
Sample A Female 336.0
Sample B Female 545.5
Sample C Male 824.1
Sample D Male 364.2
Ventral spinal cord
nTPM: 451.5
Samples: 4

Max nTPM: 517.1
Min nTPM: 333.4
Sample A Female 333.4
Sample B Female 509.6
Sample C Male 517.1
Sample D Male 445.7

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