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RPLP0
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:523.0 nTPM
GTEx:523.0 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:137.0 nTPM
Mouse:565.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 523.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 523.0
Samples: 105

Max nTPM: 803.0
Min nTPM: 192.5
Std nTPM: 131.6
Median nTPM:
321_1 62 years, female 803.0
218_1 71 years, female 787.3
319_1 81 years, male 773.4
320_1 89 years, female 756.3
355_1 70 years, female 743.2
389_1 86 years, female 720.5
377_1 82 years, female 704.0
322_1 76 years, male 694.2
353_1 82 years, female 693.3
354_1 81 years, female 689.9
153_1 70 years, female 686.2
352_1 62 years, male 685.2
189_1 76 years, male 679.9
6_1 73 years, female 664.4
405_1 91 years, male 663.7
386_1 76 years, male 656.5
35_1 74 years, female 654.3
251_1 78 years, male 652.1
376_1 75 years, female 648.6
350_1 84 years, female 646.6
318_1 68 years, male 634.4
2_1 77 years, female 629.8
447_1 81 years, male 629.7
404_1 82 years, female 619.1
379_1 60 years, male 617.3
526_1 61 years, male 616.3
384_1 83 years, male 614.6
394_1 75 years, female 613.4
246_1 77 years, male 604.1
243_1 75 years, male 598.9
293_1 68 years, female 598.5
351_1 91 years, male 596.4
163_1 78 years, male 593.8
17_1 71 years, male 590.5
316_1 62 years, male 583.7
307_1 66 years, female 582.7
172_1 72 years, female 581.4
425_1 59 years, female 580.9
335_1 73 years, female 579.3
406_1 79 years, male 571.2
311_1 78 years, male 568.1
375_1 74 years, female 568.0
317_1 60 years, male 565.7
452_1 88 years, female 565.6
349_1 83 years, male 563.8
291_1 76 years, male 561.5
503_1 68 years, male 559.4
237_1 82 years, male 556.8
292_1 71 years, male 545.4
145_1 84 years, male 543.1
177_1 74 years, male 540.0
173_1 67 years, male 534.4
286_1 68 years, female 531.8
356_1 87 years, female 528.3
120_1 70 years, female 524.1
137_1 83 years, male 518.7
295_1 61 years, female 518.0
41_1 94 years, female 513.7
347_1 72 years, male 508.4
480_1 63 years, male 506.0
126_1 63 years, male 505.6
495_1 57 years, female 504.9
229_1 69 years, female 501.2
18_1 88 years, male 500.5
266_1 85 years, male 500.5
4_1 88 years, female 498.8
348_1 84 years, male 495.5
517_1 88 years, male 489.0
99_1 64 years, male 485.3
518_1 75 years, female 481.2
468_1 89 years, male 480.3
115_1 83 years, male 477.2
139_1 64 years, female 471.7
109_1 81 years, female 465.5
254_1 77 years, female 458.8
506_1 65 years, male 454.3
396_1 62 years, male 448.8
265_1 87 years, male 443.2
217_1 76 years, male 438.9
315_1 62 years, female 436.3
499_1 55 years, female 434.6
308_1 70 years, female 412.7
264_1 73 years, female 411.5
117_1 61 years, male 408.4
324_1 76 years, male 402.7
288_1 66 years, female 401.3
119_1 70 years, female 397.8
9_1 66 years, female 394.9
81_1 67 years, male 377.6
415_1 77 years, female 376.6
414_1 84 years, female 375.3
162_1 79 years, female 363.0
42_1 85 years, male 359.8
142_1 61 years, female 352.8
32_1 67 years, male 350.6
466_1 57 years, female 347.3
314_1 67 years, male 336.4
313_1 79 years, female 318.5
89_1 63 years, male 295.5
43_1 64 years, female 272.4
149_1 88 years, male 246.6
491_1 89 years, female 245.4
501_1 88 years, male 228.9
413_1 59 years, female 212.9
490_1 67 years, female 192.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 50.7
FF:10030-101E3 24-65 years, mixed 50.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.0
Pig sample Sample description nTPM
Retina
nTPM: 137.0
Samples: 4

Max nTPM: 156.5
Min nTPM: 113.5
Sample A Female 124.0
Sample B Female 156.5
Sample C Male 153.9
Sample D Male 113.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 565.7
Mouse sample Sample description nTPM
Retina
nTPM: 565.7
Samples: 4

Max nTPM: 660.5
Min nTPM: 382.1
Sample A Male 582.0
Sample B Male 382.1
Sample C Female 638.2
Sample D Female 660.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.