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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:599.5 nTPM
HPA:599.5 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:314.4 nTPM
Mouse:344.7 nTPM
Allen mouse:7.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 599.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 599.5
2396 Male, age 61, right hemisphere 734.2
2497 Male, age 66, unknown 535.0
2032 Female, age 42, unknown 529.3
Centromedial thalamic nucleus
nTPM: 550.4
2279 Female, age 85, left hemisphere 575.7
2401 Male, age 76, right hemisphere 525.0
Habenula
nTPM: 532.4
1957 Male, age 80, both hemispheres 544.1
2252 Male, age 62, unknown 532.3
2276 Male, age 66, unknown 531.5
2203 Male, age 61, left hemisphere 521.6
Lateral geniculate body
nTPM: 536.7
2575 Female, age 94, right hemisphere 564.7
2857 Male, age 74, right hemisphere 552.2
2659 Male, age 66, unknown 549.3
2841 Male, age 80, both hemispheres 541.0
2035 Female, age 72, unknown 540.4
1953 Male, age 62, unknown 531.9
2399 Male, age 61, left hemisphere 514.1
2106 Female, age 67, right hemisphere 500.4
Lateral thalamic nuclei
nTPM: 543.0
2577 Male, age 74, both hemispheres 566.4
2573 Female, age 94, left hemisphere 551.4
2661 Female, age 72, unknown 549.1
2765 Female, age 67, both hemispheres 528.0
1903 Male, age 76, left hemisphere 519.9
Medial dorsal thalamic nucleus
nTPM: 554.4
2572 Female, age 94, right hemisphere 630.5
1971 Male, age 61, right hemisphere 608.0
2492 Male, age 75, right hemisphere 564.0
1930 Female, age 42, unknown 559.8
1810 Male, age 48, unknown 556.4
2039 Female, age 72, unknown 548.5
2576 Male, age 74, both hemispheres 546.7
2498 Male, age 66, unknown 537.0
2402 Female, age 67, both hemispheres 536.9
2660 Female, age 72, unknown 536.2
1859 Male, age 76, both hemispheres 533.9
2026 Male, age 62, unknown 526.0
2283 Male, age 80, right hemisphere 523.7
Medial geniculate body
nTPM: 557.3
2571 Male, age 75, right hemisphere 634.9
2650 Female, age 94, left hemisphere 560.1
2049 Male, age 76, both hemispheres 550.6
2217 Female, age 72, unknown 541.7
2207 Male, age 80, right hemisphere 541.2
2657 Male, age 74, right hemisphere 538.1
1811 Female, age 42, unknown 534.5
Nucleus reuniens
nTPM: 544.8
2205 Male, age 80, left hemisphere 556.5
2210 Female, age 85, left hemisphere 548.2
2212 Female, age 67, left hemisphere 529.7
Nucleus rhomboideus
nTPM: 543.9
2213 Female, age 67, left hemisphere 552.9
2280 Female, age 85, left hemisphere 549.7
2206 Male, age 80, both hemispheres 529.2
Posterior thalamic nucleus
nTPM: 580.1
2649 Female, age 94, both hemispheres 672.9
2655 Male, age 74, right hemisphere 571.4
2495 Female, age 67, right hemisphere 539.9
2266 Male, age 76, right hemisphere 536.4
Pulvinar
nTPM: 534.9
2499 Male, age 66, unknown 571.1
1929 Male, age 48, unknown 540.9
1972 Male, age 62, unknown 538.6
2582 Female, age 72, unknown 534.5
2496 Female, age 67, right hemisphere 533.5
2724 Male, age 74, right hemisphere 530.9
2214 Male, age 76, right hemisphere 530.3
1899 Female, age 42, unknown 525.4
2398 Male, age 61, left hemisphere 521.7
1932 Male, age 80, right hemisphere 521.6
Subthalamic nucleus
nTPM: 554.3
2056 Female, age 72, unknown 576.8
2124 Male, age 62, unknown 574.9
2658 Male, age 74, both hemispheres 567.7
2275 Male, age 66, unknown 548.4
2779 Female, age 42, unknown 546.9
2216 Male, age 48, unknown 546.6
2406 Female, age 72, unknown 539.2
2282 Male, age 61, both hemispheres 534.1
Ventral posterolateral thalamic nucleus
nTPM: 547.8
2397 Male, age 61, right hemisphere 577.3
2578 Male, age 74, both hemispheres 560.6
2197 Male, age 80, both hemispheres 540.8
2570 Male, age 75, right hemisphere 537.5
2581 Female, age 72, unknown 536.8
2740 Male, age 76, right hemisphere 533.6
Ventral posteromedial thalamic nucleus
nTPM: 543.8
2202 Male, age 61, left hemisphere 556.3
2653 Male, age 74, both hemispheres 546.6
2281 Male, age 75, right hemisphere 546.0
2127 Male, age 76, right hemisphere 536.7
2758 Male, age 80, both hemispheres 533.5
Ventral thalamic nuclei
nTPM: 546.8
2291 Female, age 72, unknown 568.3
2580 Male, age 66, unknown 564.3
2652 Male, age 74, left hemisphere 550.9
1912 Female, age 42, unknown 546.9
2285 Male, age 62, unknown 542.8
1845 Male, age 48, unknown 540.6
1860 Male, age 76, both hemispheres 537.5
2204 Male, age 80, both hemispheres 536.3
2858 Female, age 72, unknown 533.3
Ventromedial nucleus
nTPM: 567.5
1982 Female, age 72, unknown 573.4
1822 Female, age 42, unknown 561.6
Zona incerta
nTPM: 549.7
2403 Male, age 62, unknown 570.1
2822 Male, age 74, right hemisphere 560.6
2215 Male, age 66, unknown 543.4
2663 Female, age 72, unknown 542.7
2208 Male, age 80, right hemisphere 531.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 26.5
FF:10154-103A1 76 years, female 26.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 314.4
Pig sample Sample description nTPM
Thalamus
nTPM: 314.5
Samples: 4

Max nTPM: 367.2
Min nTPM: 246.9
Sample A Female 315.6
Sample B Female 246.9
Sample C Male 328.1
Sample D Male 367.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 344.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 344.7
Samples: 4

Max nTPM: 392.0
Min nTPM: 308.9
Sample A Male 356.5
Sample B Male 321.3
Sample C Female 392.0
Sample D Female 308.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.7
68795446 Antisense, RP_041130_01_F11, Mouse strain C57BL/6J (56 days, male) 8.5
74047927 Antisense, RP_051214_02_D12, Mouse strain C57BL/6J (56 days, male) 6.8

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