MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:571.6 nTPM
HPA:571.6 nTPM
GTEx:397.3 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:358.5 nTPM
Mouse:259.0 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 571.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 561.1
2586 Male, age 75, left hemisphere 613.8
2666 Male, age 74, left hemisphere 591.8
1870 Female, age 42, unknown 567.7
2828 Female, age 72, unknown 564.4
2411 Female, age 72, unknown 562.1
1830 Male, age 51, unknown 550.2
1827 Male, age 72, unknown 550.0
1833 Male, age 53, unknown 547.5
2019 Male, age 18, unknown 543.5
2219 Male, age 76, both hemispheres 519.6
Dorsal raphe nucleus
nTPM: 558.4
2016 Female, age 72, unknown 569.5
2298 Female, age 72, unknown 562.1
2750 Male, age 76, both hemispheres 557.6
2047 Male, age 72, unknown 554.3
1828 Male, age 53, unknown 548.6
Inferior colliculus
nTPM: 549.1
1848 Female, age 42, unknown 557.5
1890 Male, age 53, unknown 555.3
2849 Male, age 72, unknown 543.1
2097 Female, age 72, unknown 540.5
Median raphe nucleus
nTPM: 546.2
2220 Male, age 76, midline 546.2
Pedunculopontine tegmental nucleus
nTPM: 571.6
2338 Male, age 61, both hemispheres 630.4
2334 Male, age 80, both hemispheres 558.9
1921 Female, age 85, both hemispheres 525.6
Periaquaductal grey, anterior
nTPM: 560.9
2502 Female, age 75, unknown 571.7
1947 Male, age 18, unknown 559.2
1795 Male, age 51, unknown 551.6
Periaquaductal grey, dorsal
nTPM: 552.0
1840 Male, age 53, unknown 568.6
2464 Female, age 72, unknown 555.1
1831 Male, age 72, unknown 550.2
2850 Male, age 76, both hemispheres 534.0
Periaquaductal grey, lateral
nTPM: 545.3
2053 Male, age 18, unknown 570.9
2140 Male, age 76, both hemispheres 539.1
2272 Male, age 74, both hemispheres 525.8
Pretectal area
nTPM: 541.0
2407 Male, age 75, both hemispheres 561.2
2825 Male, age 18, unknown 556.5
2316 Male, age 76, right hemisphere 548.7
1815 Male, age 53, unknown 546.8
2224 Female, age 72, unknown 541.6
1817 Female, age 42, unknown 541.0
2007 Male, age 72, unknown 536.5
1816 Male, age 51, unknown 532.6
2273 Male, age 74, both hemispheres 529.8
2667 Female, age 75, unknown 529.6
1944 Female, age 72, unknown 526.9
Red nucleus
nTPM: 562.9
2584 Male, age 75, left hemisphere 601.2
1865 Male, age 51, unknown 579.6
2503 Female, age 72, unknown 572.5
1904 Male, age 53, unknown 569.8
2227 Male, age 72, unknown 567.4
2769 Male, age 72, unknown 565.1
1821 Female, age 72, unknown 563.9
1954 Female, age 42, unknown 557.5
2725 Female, age 75, unknown 549.1
2588 Male, age 74, left hemisphere 545.0
2785 Male, age 18, unknown 543.7
2823 Male, age 76, right hemisphere 540.7
Substantia nigra
nTPM: 564.2
2590 Female, age 75, unknown 588.3
2665 Male, age 74, both hemispheres 584.0
2583 Male, age 75, right hemisphere 581.5
1851 Male, age 51, unknown 577.5
2699 Male, age 18, unknown 566.2
2241 Male, age 72, unknown 565.2
1916 Female, age 42, unknown 562.2
1941 Male, age 53, unknown 543.1
1889 Female, age 72, unknown 539.4
2409 Female, age 72, unknown 534.8
Superior colliculus
nTPM: 557.9
2664 Male, age 75, both hemispheres 596.7
1995 Male, age 72, unknown 572.4
1913 Female, age 42, unknown 569.7
2587 Male, age 74, left hemisphere 564.9
1839 Male, age 51, unknown 556.2
1796 Male, age 53, unknown 552.1
2668 Female, age 75, unknown 550.5
2261 Male, age 18, unknown 545.9
2087 Female, age 72, unknown 539.6
1895 Male, age 76, right hemisphere 530.9
Ventral tegmental area
nTPM: 563.7
2021 Male, age 53, unknown 572.7
1915 Female, age 42, unknown 571.3
2223 Female, age 72, unknown 567.1
2410 Female, age 72, unknown 564.2
1942 Male, age 51, unknown 561.7
2218 Male, age 76, both hemispheres 545.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 397.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 397.3
Samples: 139

Max nTPM: 945.8
Min nTPM: 190.5
Std nTPM: 136.1
Median nTPM: 361.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 945.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 853.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 771.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 740.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 734.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 710.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 702.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 621.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 600.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 597.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 591.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 358.5
Pig sample Sample description nTPM
Midbrain
nTPM: 334.2
Samples: 4

Max nTPM: 518.9
Min nTPM: 210.1
Sample A Female 518.9
Sample B Female 374.8
Sample C Male 233.1
Sample D Male 210.1
Periaqueductal gray
nTPM: 271.5
Samples: 3

Max nTPM: 293.3
Min nTPM: 237.0
Sample B Female 293.3
Sample C Male 284.2
Sample D Male 237.0
Substantia nigra
nTPM: 358.5
Samples: 4

Max nTPM: 474.6
Min nTPM: 273.9
Sample A Female 474.6
Sample B Female 388.3
Sample C Male 273.9
Sample D Male 297.2
Superior colliculi
nTPM: 348.8
Samples: 4

Max nTPM: 419.1
Min nTPM: 282.3
Sample A Female 419.1
Sample B Female 406.1
Sample C Male 282.3
Sample D Male 287.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 259.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.0
Samples: 4

Max nTPM: 288.6
Min nTPM: 230.3
Sample A Male 288.6
Sample B Male 247.1
Sample C Female 230.3
Sample D Female 269.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
68795446 Antisense, RP_041130_01_F11, Mouse strain C57BL/6J (56 days, male) 8.1
74047927 Antisense, RP_051214_02_D12, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.