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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:982.6 nTPM
HPA:982.6 nTPM
FANTOM5:796.0 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 982.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 899.4
2188 Female, age 91, both hemispheres 913.9
2301 Female, age 85, both hemispheres 909.1
2090 Male, age 80, both hemispheres 895.1
1984 Male, age 76, both hemispheres 879.3
Area postrema
nTPM: 884.9
2799 Male, age 61, both hemispheres 900.0
2306 Male, age 80, both hemispheres 885.6
2054 Male, age 76, both hemispheres 868.9
Cuneate nuclei
nTPM: 880.0
2376 Male, age 61, both hemispheres 898.3
2131 Male, age 76, both hemispheres 880.8
2381 Male, age 80, both hemispheres 860.9
Dorsal cochlear nucleus
nTPM: 897.3
2802 Male, age 74, right hemisphere 939.3
2187 Female, age 91, both hemispheres 923.0
2058 Male, age 76, both hemispheres 903.0
2370 Male, age 61, both hemispheres 867.0
2378 Male, age 80, both hemispheres 854.1
Dorsal medullary reticular nucleus
nTPM: 906.9
2040 Female, age 85, both hemispheres 973.6
2088 Male, age 76, both hemispheres 881.4
2373 Male, age 61, both hemispheres 865.6
Dorsal motor vagal complex
nTPM: 888.3
2000 Male, age 74, unknown 938.6
2844 Male, age 55, unknown 937.7
2133 Female, age 91, both hemispheres 922.4
2797 Male, age 61, both hemispheres 898.9
2643 Male, age 74, both hemispheres 879.5
2185 Male, age 76, both hemispheres 875.4
2813 Female, age 72, unknown 859.6
2807 Female, age 85, both hemispheres 794.6
Dorsal tegmental nucleus
nTPM: 897.8
2083 Male, age 80, both hemispheres 951.0
2326 Male, age 74, both hemispheres 948.3
1936 Male, age 76, left hemisphere 888.3
2358 Male, age 61, both hemispheres 803.7
Dorsolateral tegmental area
nTPM: 904.2
2751 Female, age 85, both hemispheres 973.3
2654 Male, age 80, both hemispheres 943.7
2360 Male, age 74, both hemispheres 911.5
2141 Male, age 76, both hemispheres 882.6
2337 Male, age 61, both hemispheres 810.0
Gigantocellular reticular nuclei, medullary
nTPM: 925.0
2314 Male, age 61, both hemispheres 947.4
2462 Male, age 74, both hemispheres 943.6
1876 Female, age 85, both hemispheres 939.4
2022 Male, age 76, right hemisphere 926.2
2387 Female, age 91, both hemispheres 911.8
2310 Male, age 80, both hemispheres 881.6
Gigantocellular reticular nuclei, pars
nTPM: 899.6
2168 Male, age 76, both hemispheres 954.7
2084 Female, age 85, both hemispheres 941.7
2336 Male, age 61, both hemispheres 884.9
2330 Male, age 80, both hemispheres 863.4
2706 Male, age 80, both hemispheres 853.2
Inferior olive
nTPM: 943.5
2563 Male, age 74, both hemispheres 1054.0
2085 Female, age 85, both hemispheres 997.5
2178 Male, age 61, both hemispheres 910.2
2379 Male, age 80, both hemispheres 885.0
2628 Female, age 91, both hemispheres 870.9
Kolliker-Fuse nucleus
nTPM: 923.3
2315 Male, age 76, right hemisphere 954.6
2163 Male, age 80, both hemispheres 914.9
2793 Female, age 91, left hemisphere 900.4
Lateral lemniscal nuclei
nTPM: 931.7
2746 Female, age 85, left hemisphere 966.8
2169 Male, age 76, both hemispheres 956.6
2036 Male, age 80, both hemispheres 935.0
2453 Male, age 74, right hemisphere 915.8
2320 Female, age 91, left hemisphere 884.5
Lateral medullary reticular nucleus
nTPM: 950.0
2305 Male, age 74, both hemispheres 1029.8
2044 Male, age 76, both hemispheres 957.1
2804 Female, age 91, both hemispheres 948.8
2190 Female, age 85, both hemispheres 937.2
2852 Male, age 80, both hemispheres 932.1
2374 Male, age 61, both hemispheres 895.0
Lateral parabrachial nucleus
nTPM: 921.9
2139 Female, age 85, right hemisphere 979.8
2792 Male, age 76, both hemispheres 932.5
2013 Male, age 80, both hemispheres 918.2
2790 Male, age 61, both hemispheres 857.0
Lateral vestibular nucleus
nTPM: 913.4
2311 Male, age 80, both hemispheres 916.6
2184 Male, age 76, both hemispheres 910.2
Locus coeruleus
nTPM: 919.2
2014 Male, age 55, unknown 958.0
2123 Female, age 91, both hemispheres 945.8
2317 Female, age 72, unknown 935.6
2788 Male, age 74, unknown 927.4
1980 Male, age 76, both hemispheres 895.1
2720 Male, age 74, both hemispheres 890.3
2162 Male, age 80, both hemispheres 882.3
Medial olivary nucleus
nTPM: 935.8
2138 Female, age 91, both hemispheres 1010.0
1962 Male, age 76, both hemispheres 948.1
1943 Male, age 61, both hemispheres 919.5
2851 Male, age 80, both hemispheres 865.4
Medial parabrachial nucleus
nTPM: 917.9
2170 Female, age 91, both hemispheres 985.3
2463 Female, age 85, right hemisphere 940.8
2854 Male, age 80, both hemispheres 906.7
2786 Male, age 76, both hemispheres 888.2
2156 Male, age 61, both hemispheres 868.6
Medial periolivary nuclei
nTPM: 935.4
2063 Male, age 76, both hemispheres 993.8
2791 Male, age 74, right hemisphere 987.6
2171 Female, age 85, both hemispheres 963.6
2081 Male, age 80, both hemispheres 881.0
2458 Female, age 91, both hemispheres 851.0
Medial vestibular nucleus
nTPM: 933.3
2801 Male, age 74, both hemispheres 974.3
2803 Female, age 91, both hemispheres 958.5
2093 Male, age 80, both hemispheres 951.2
2743 Female, age 85, both hemispheres 939.4
2134 Male, age 76, both hemispheres 912.7
2624 Male, age 61, both hemispheres 863.9
Motor facial nucleus
nTPM: 922.1
2062 Male, age 76, both hemispheres 1006.3
2365 Male, age 74, right hemisphere 976.1
2126 Male, age 61, both hemispheres 918.3
2795 Female, age 91, both hemispheres 885.6
2697 Female, age 85, both hemispheres 878.8
2327 Male, age 80, both hemispheres 867.7
Motor hypoglossal nucleus
nTPM: 893.3
2125 Female, age 91, both hemispheres 980.6
2132 Female, age 85, both hemispheres 934.5
2182 Male, age 80, both hemispheres 861.6
2277 Male, age 76, both hemispheres 857.4
2461 Male, age 61, both hemispheres 832.4
Motor trigeminal nucleus
nTPM: 891.3
2079 Male, age 80, both hemispheres 915.1
2309 Male, age 76, both hemispheres 903.5
2560 Male, age 74, both hemispheres 900.6
2335 Male, age 61, both hemispheres 879.3
2321 Female, age 91, both hemispheres 858.1
Nuclei of the trapezoid body
nTPM: 961.4
2159 Male, age 61, both hemispheres 1029.2
1983 Male, age 76, both hemispheres 1006.5
2735 Female, age 85, both hemispheres 988.8
2166 Male, age 80, both hemispheres 893.6
2368 Female, age 91, both hemispheres 888.9
Nucleus ambiguus
nTPM: 951.8
2071 Male, age 76, both hemispheres 978.4
2096 Female, age 85, both hemispheres 925.1
Nucleus cuneatus
nTPM: 886.0
2564 Male, age 74, both hemispheres 973.1
2100 Male, age 76, both hemispheres 889.5
2380 Male, age 80, both hemispheres 872.8
2562 Male, age 61, both hemispheres 870.2
2808 Female, age 85, both hemispheres 866.2
2805 Female, age 91, both hemispheres 844.3
Nucleus gracilis
nTPM: 884.9
2627 Male, age 74, both hemispheres 954.1
2382 Male, age 80, both hemispheres 863.3
2299 Female, age 85, both hemispheres 837.2
Nucleus raphe magnus
nTPM: 954.0
2160 Male, age 61, both hemispheres 1097.8
2455 Male, age 74, both hemispheres 975.0
2172 Female, age 85, both hemispheres 949.5
2051 Male, age 76, both hemispheres 936.9
2328 Male, age 80, both hemispheres 897.5
2459 Female, age 91, both hemispheres 867.7
Nucleus raphe obscurus
nTPM: 950.3
2845 Female, age 85, midline 974.8
2142 Male, age 76, midline 938.9
2800 Male, age 61, midline 937.2
Nucleus raphe pallidus
nTPM: 936.9
1924 Male, age 61, midline 966.3
2145 Male, age 76, midline 929.9
2183 Male, age 80, midline 914.5
Nucleus tractus solitarii
nTPM: 844.2
2144 Female, age 91, right hemisphere 899.0
2656 Male, age 76, both hemispheres 876.3
2191 Female, age 85, both hemispheres 812.0
2307 Male, age 80, both hemispheres 789.4
Paramedian reticular nucleus
nTPM: 936.6
2057 Male, age 80, both hemispheres 965.6
2050 Female, age 85, both hemispheres 963.7
2313 Male, age 61, both hemispheres 914.1
2052 Male, age 76, both hemispheres 903.0
Parvicellular reticular nuclei
nTPM: 911.4
2119 Male, age 80, both hemispheres 941.7
2095 Male, age 76, both hemispheres 930.7
2558 Male, age 74, both hemispheres 861.8
Parvicellular reticular nuclei, medullary
nTPM: 917.5
2189 Female, age 91, both hemispheres 939.9
2091 Female, age 85, both hemispheres 912.0
2181 Male, age 80, left hemisphere 900.6
Peritrigeminal nucleus
nTPM: 959.0
2067 Female, age 85, both hemispheres 963.9
2136 Male, age 76, both hemispheres 961.7
2179 Male, age 61, both hemispheres 951.3
Pontine nuclei
nTPM: 982.6
2727 Male, age 61, right hemisphere 1100.3
1863 Male, age 55, unknown 1039.5
2787 Female, age 85, both hemispheres 1002.0
2109 Female, age 72, unknown 992.5
1968 Male, age 76, left hemisphere 969.4
2454 Male, age 74, left hemisphere 965.0
2319 Female, age 91, both hemispheres 918.5
2115 Male, age 80, left hemisphere 873.8
Pontine raphe nucleus
nTPM: 944.2
2122 Female, age 85, midline 970.0
2853 Male, age 76, midline 918.5
Posteroventral cochlear nucleus
nTPM: 928.4
2752 Female, age 85, both hemispheres 964.2
2135 Female, age 91, both hemispheres 945.0
2070 Male, age 76, both hemispheres 930.8
2341 Male, age 80, both hemispheres 914.7
2371 Male, age 61, both hemispheres 887.3
Prepositus hypoglossal nucleus
nTPM: 914.9
2855 Female, age 85, right hemisphere 952.5
2086 Male, age 80, both hemispheres 877.2
Principal sensory trigeminal nucleus
nTPM: 941.1
2158 Male, age 61, both hemispheres 1038.2
2008 Male, age 80, left hemisphere 939.8
2324 Male, age 76, both hemispheres 903.4
2367 Female, age 91, left hemisphere 882.9
Reticular pontine nucleus, caudal
nTPM: 918.9
2092 Male, age 76, both hemispheres 962.7
2457 Female, age 91, both hemispheres 905.4
2332 Male, age 80, right hemisphere 904.8
2559 Male, age 74, both hemispheres 902.9
Reticular pontine nucleus, oral
nTPM: 934.7
2012 Female, age 85, both hemispheres 958.6
2361 Male, age 74, both hemispheres 957.3
1939 Male, age 80, both hemispheres 949.6
2167 Male, age 76, both hemispheres 907.3
2366 Female, age 91, both hemispheres 900.6
Reticulotegmental nucleus
nTPM: 908.3
2325 Male, age 76, both hemispheres 916.0
2322 Female, age 91, both hemispheres 910.1
2452 Male, age 74, both hemispheres 907.2
2333 Male, age 80, both hemispheres 899.7
Spinal trigeminal nucleus, caudal
nTPM: 904.4
2390 Female, age 91, both hemispheres 933.0
2447 Male, age 76, both hemispheres 923.2
2308 Male, age 80, both hemispheres 896.4
2312 Male, age 61, both hemispheres 885.1
2642 Male, age 74, both hemispheres 884.2
Spinal trigeminal nucleus, interpolar
nTPM: 932.5
2066 Male, age 76, right hemisphere 999.3
2033 Male, age 80, both hemispheres 918.5
2625 Male, age 61, both hemispheres 917.6
2386 Female, age 85, both hemispheres 915.9
2389 Female, age 91, both hemispheres 911.0
Spinal trigeminal nucleus, oral
nTPM: 905.8
2737 Female, age 85, both hemispheres 921.9
1978 Male, age 76, both hemispheres 905.9
2164 Male, age 80, both hemispheres 889.7
Spinal vestibular nucleus
nTPM: 930.7
2186 Female, age 91, both hemispheres 956.3
2806 Female, age 85, both hemispheres 948.2
2748 Male, age 76, both hemispheres 947.3
2780 Male, age 80, both hemispheres 940.7
2384 Male, age 74, both hemispheres 926.4
2796 Male, age 61, both hemispheres 865.4
Subcoeruleus area
nTPM: 927.2
2369 Female, age 85, left hemisphere 966.7
1958 Male, age 80, both hemispheres 936.5
2323 Female, age 91, left hemisphere 913.6
2451 Male, age 74, both hemispheres 911.1
2089 Male, age 76, left hemisphere 908.3
Superior olive
nTPM: 930.4
2364 Male, age 74, right hemisphere 1005.1
1875 Female, age 85, both hemispheres 972.6
2020 Male, age 76, both hemispheres 953.5
2329 Male, age 80, right hemisphere 880.8
2561 Female, age 91, both hemispheres 840.3
Superior vestibular nucleus
nTPM: 941.2
2383 Male, age 74, both hemispheres 960.0
2015 Male, age 80, both hemispheres 933.8
2061 Male, age 76, both hemispheres 929.8
Ventral medullary reticular nucleus
nTPM: 919.3
2060 Male, age 76, both hemispheres 929.5
2372 Male, age 61, both hemispheres 909.1
Ventral periolivary nuclei
nTPM: 921.2
2023 Male, age 76, both hemispheres 963.7
2130 Female, age 85, both hemispheres 947.1
2165 Male, age 80, both hemispheres 944.7
2794 Female, age 91, left hemisphere 829.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 936.2
1986 Male, age 76, both hemispheres 962.0
2302 Female, age 91, both hemispheres 954.5
2741 Female, age 85, both hemispheres 945.7
2180 Male, age 61, both hemispheres 928.8
2118 Male, age 80, both hemispheres 890.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 905.2
1959 Male, age 76, both hemispheres 937.6
2449 Male, age 74, both hemispheres 935.5
2840 Female, age 85, both hemispheres 923.5
2161 Male, age 80, both hemispheres 888.5
2456 Female, age 91, both hemispheres 878.1
2359 Male, age 61, both hemispheres 868.1

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 796.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 749.1
FF:10182-103D2 60 years, female 895.8
FF:10165-103B3 76 years, female 602.5
Medulla oblongata
Scaled Tags Per Million: 766.1
FF:10174-103C3 60 years, female 984.5
FF:10038-101F2 18-64 years, mixed 731.8
FF:10155-103A2 76 years, female 582.0
Pons
Scaled Tags Per Million: 796.0
FF:10033-101E6 18-54 years, mixed 796.0

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.0
71919523 Antisense, RP_051012_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 0.0
71919523 Antisense, RP_051012_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0

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