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MLF2
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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:234.6 nTPM
HPA:234.6 nTPM
GTEx:255.0 nTPM
FANTOM5:114.3 Scaled Tags Per Million
Pig:241.9 nTPM
Mouse:458.1 nTPM
Allen mouse:26.8 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA010811Antibody HPA010859
Glial cells MediumLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 234.6
Sample id Sample description nTPM
Hippocampus
nTPM: 215.5
1898 Male, age 80, left hemisphere 233.5
2621 Female, age 67, right hemisphere 224.3
1855 Male, age 76, left hemisphere 222.7
2148 Female, age 91, left hemisphere 208.5
1911 Female, age 85, right hemisphere 201.9
2529 Female, age 94, left hemisphere 201.8
Dentate gyrus
nTPM: 216.4
1927 Female, age 91, both hemispheres 235.1
2010 Male, age 76, both hemispheres 221.0
2530 Female, age 94, left hemisphere 217.4
2246 Female, age 85, both hemispheres 213.9
2528 Male, age 74, both hemispheres 205.6
2531 Female, age 67, both hemispheres 205.2
Entorhinal gyrus
nTPM: 216.4
2613 Female, age 94, left hemisphere 229.1
1938 Female, age 85, left hemisphere 225.3
2764 Male, age 80, right hemisphere 225.0
1787 Male, age 76, left hemisphere 218.1
2117 Female, age 91, right hemisphere 203.1
2686 Male, age 75, right hemisphere 198.1
Hippocampus, CA1
nTPM: 225.8
2749 Male, age 80, left hemisphere 275.6
2045 Male, age 76, both hemispheres 230.8
1873 Female, age 85, both hemispheres 217.4
2527 Male, age 74, both hemispheres 210.9
2082 Female, age 91, right hemisphere 194.4
Hippocampus, CA2
nTPM: 214.6
1892 Male, age 76, both hemispheres 236.6
1963 Male, age 80, left hemisphere 230.0
2249 Male, age 74, both hemispheres 212.3
2437 Female, age 94, left hemisphere 208.3
1940 Female, age 85, left hemisphere 204.4
2113 Female, age 91, right hemisphere 196.3
Hippocampus, CA3
nTPM: 227.6
2137 Male, age 80, left hemisphere 255.1
2620 Female, age 94, left hemisphere 247.5
1867 Male, age 76, both hemispheres 226.8
2436 Male, age 74, both hemispheres 223.5
2861 Female, age 67, both hemispheres 208.5
1891 Female, age 85, both hemispheres 203.9
Parahippocampal cortex
nTPM: 215.6
1850 Male, age 80, both hemispheres 228.8
2250 Female, age 67, right hemisphere 223.3
2245 Female, age 91, both hemispheres 222.3
2693 Female, age 94, both hemispheres 218.4
1933 Female, age 85, both hemispheres 216.7
2532 Female, age 72, left hemisphere 216.4
1990 Female, age 91, right hemisphere 215.9
2018 Male, age 76, both hemispheres 206.3
2622 Female, age 67, right hemisphere 205.5
2692 Male, age 74, both hemispheres 202.4
Perirhinal gyrus
nTPM: 234.6
1847 Female, age 91, left hemisphere 247.3
1794 Male, age 80, right hemisphere 246.3
1841 Female, age 85, right hemisphere 230.0
2848 Male, age 76, right hemisphere 225.5
2521 Female, age 94, right hemisphere 223.9
Subiculum
nTPM: 209.0
1901 Male, age 80, both hemispheres 220.1
1977 Female, age 85, both hemispheres 213.9
2619 Male, age 74, both hemispheres 211.0
2042 Male, age 76, both hemispheres 208.6
2438 Female, age 94, left hemisphere 207.0
2729 Female, age 91, right hemisphere 193.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 255.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 255.0
Samples: 197

Max nTPM: 466.9
Min nTPM: 110.5
Std nTPM: 73.6
Median nTPM: 251.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 466.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 452.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 447.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 430.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 429.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 426.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 414.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 406.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 398.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 394.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 394.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 389.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 387.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 366.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 365.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 361.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 352.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 351.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 350.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 348.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 347.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 345.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 344.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 340.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 337.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 337.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 334.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 331.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 331.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 330.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 329.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 329.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 328.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 321.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 321.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 321.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 319.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 317.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 316.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 312.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 312.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 310.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 310.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 308.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 308.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 308.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 306.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 305.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 305.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 303.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 302.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 302.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 301.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 300.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 299.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 297.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 295.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 293.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 292.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 292.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 292.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 291.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 290.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 290.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 285.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 283.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 283.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 282.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 282.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 278.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 278.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 276.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 276.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 275.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 275.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 272.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 272.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 272.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 271.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 271.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 271.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 270.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 270.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 269.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 269.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 266.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 265.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 263.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 260.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 258.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 257.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 255.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 254.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 254.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 254.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 252.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 251.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 251.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 251.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 249.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 249.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 249.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 249.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 246.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 244.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 244.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 240.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 240.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 239.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 239.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 237.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 236.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 236.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 233.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 231.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 231.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 228.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 225.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 224.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 223.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 222.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 219.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 218.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 217.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 216.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 216.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 216.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 216.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 215.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 215.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 215.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 214.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 213.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 213.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 213.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 212.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 211.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 211.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 210.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 209.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 208.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 207.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 204.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 202.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 200.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 200.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 198.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 198.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 196.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 194.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 193.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 193.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 192.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 192.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 190.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 190.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 189.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 189.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 187.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 186.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 186.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 184.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 183.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 182.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 181.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 180.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 180.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 180.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 177.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 176.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 169.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 169.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 167.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 162.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 160.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 159.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 159.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 159.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 158.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 158.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 158.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 158.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 155.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 151.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 150.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 149.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 148.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 147.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 143.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 143.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 138.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 138.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 137.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 137.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 131.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 130.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 110.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 114.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 114.3
FF:10169-103B7 60 years, female 121.3
FF:10153-102I9 76 years, female 107.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 241.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 241.9
Samples: 4

Max nTPM: 319.2
Min nTPM: 190.2
Sample A Female 319.2
Sample B Female 246.3
Sample C Male 211.8
Sample D Male 190.2
Entorhinal cortex
nTPM: 211.0
Samples: 4

Max nTPM: 240.2
Min nTPM: 186.0
Sample A Female 240.2
Sample B Female 208.8
Sample C Male 209.1
Sample D Male 186.0
Subiculum
nTPM: 193.4
Samples: 4

Max nTPM: 251.5
Min nTPM: 170.2
Sample A Female 251.5
Sample B Female 170.2
Sample C Male 180.7
Sample D Male 171.0
Ventral hippocampus
nTPM: 222.5
Samples: 4

Max nTPM: 274.2
Min nTPM: 142.6
Sample A Female 219.9
Sample B Female 142.6
Sample C Male 253.4
Sample D Male 274.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 458.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 409.6
Samples: 4

Max nTPM: 425.4
Min nTPM: 394.9
Sample A Male 394.9
Sample B Male 425.4
Sample C Female 397.7
Sample D Female 420.5
Hippocampal formation
nTPM: 458.2
Samples: 4

Max nTPM: 484.4
Min nTPM: 444.7
Sample A Male 444.7
Sample B Male 451.1
Sample C Female 484.4
Sample D Female 452.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 26.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 26.8
513491 Antisense, RP_040810_01_H11, Mouse strain C57BL/6J (56 days, male) 26.8

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