MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:205.8 nTPM
HPA:205.8 nTPM
GTEx:185.7 nTPM
FANTOM5:110.5 Scaled Tags Per Million
Pig:200.2 nTPM
Mouse:276.9 nTPM
Allen mouse:19.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 205.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.9
1827 Male, age 72, unknown 204.9
2666 Male, age 74, left hemisphere 204.2
2828 Female, age 72, unknown 197.6
2019 Male, age 18, unknown 197.5
2411 Female, age 72, unknown 197.0
2219 Male, age 76, both hemispheres 194.0
2586 Male, age 75, left hemisphere 193.3
1870 Female, age 42, unknown 193.1
1833 Male, age 53, unknown 191.0
1830 Male, age 51, unknown 186.7
Dorsal raphe nucleus
nTPM: 193.0
2298 Female, age 72, unknown 202.8
2047 Male, age 72, unknown 197.2
1828 Male, age 53, unknown 193.4
2750 Male, age 76, both hemispheres 189.1
2016 Female, age 72, unknown 182.3
Inferior colliculus
nTPM: 196.1
2097 Female, age 72, unknown 202.1
2849 Male, age 72, unknown 199.0
1848 Female, age 42, unknown 193.8
1890 Male, age 53, unknown 189.6
Median raphe nucleus
nTPM: 196.6
2220 Male, age 76, midline 196.6
Pedunculopontine tegmental nucleus
nTPM: 195.1
2334 Male, age 80, both hemispheres 200.6
1921 Female, age 85, both hemispheres 196.6
2338 Male, age 61, both hemispheres 188.2
Periaquaductal grey, anterior
nTPM: 197.0
1795 Male, age 51, unknown 201.0
1947 Male, age 18, unknown 199.4
2502 Female, age 75, unknown 190.6
Periaquaductal grey, dorsal
nTPM: 190.9
2850 Male, age 76, both hemispheres 192.7
1840 Male, age 53, unknown 192.4
1831 Male, age 72, unknown 189.5
2464 Female, age 72, unknown 188.8
Periaquaductal grey, lateral
nTPM: 188.0
2272 Male, age 74, both hemispheres 191.1
2053 Male, age 18, unknown 188.1
2140 Male, age 76, both hemispheres 184.7
Pretectal area
nTPM: 205.8
1816 Male, age 51, unknown 222.8
1817 Female, age 42, unknown 221.8
1944 Female, age 72, unknown 216.4
2007 Male, age 72, unknown 213.8
2667 Female, age 75, unknown 213.0
1815 Male, age 53, unknown 210.7
2224 Female, age 72, unknown 196.5
2407 Male, age 75, both hemispheres 195.0
2273 Male, age 74, both hemispheres 193.4
2825 Male, age 18, unknown 192.9
2316 Male, age 76, right hemisphere 187.5
Red nucleus
nTPM: 191.1
2725 Female, age 75, unknown 202.0
2785 Male, age 18, unknown 199.1
1821 Female, age 72, unknown 196.3
2503 Female, age 72, unknown 191.4
2584 Male, age 75, left hemisphere 191.2
1954 Female, age 42, unknown 191.0
2823 Male, age 76, right hemisphere 188.5
2588 Male, age 74, left hemisphere 187.9
1865 Male, age 51, unknown 187.7
1904 Male, age 53, unknown 186.4
2227 Male, age 72, unknown 186.2
2769 Male, age 72, unknown 185.6
Substantia nigra
nTPM: 195.4
1889 Female, age 72, unknown 208.9
1916 Female, age 42, unknown 205.2
1941 Male, age 53, unknown 203.1
1851 Male, age 51, unknown 196.9
2583 Male, age 75, right hemisphere 195.4
2241 Male, age 72, unknown 191.4
2409 Female, age 72, unknown 190.7
2665 Male, age 74, both hemispheres 190.2
2699 Male, age 18, unknown 188.1
2590 Female, age 75, unknown 183.9
Superior colliculus
nTPM: 196.8
1796 Male, age 53, unknown 205.8
2261 Male, age 18, unknown 203.0
2087 Female, age 72, unknown 202.8
2668 Female, age 75, unknown 197.4
2587 Male, age 74, left hemisphere 195.9
1913 Female, age 42, unknown 194.5
1839 Male, age 51, unknown 194.4
1895 Male, age 76, right hemisphere 192.7
2664 Male, age 75, both hemispheres 192.1
1995 Male, age 72, unknown 189.5
Ventral tegmental area
nTPM: 194.2
2410 Female, age 72, unknown 201.4
1915 Female, age 42, unknown 198.4
2218 Male, age 76, both hemispheres 195.3
2223 Female, age 72, unknown 193.2
1942 Male, age 51, unknown 189.6
2021 Male, age 53, unknown 187.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 185.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.7
Samples: 139

Max nTPM: 307.7
Min nTPM: 118.3
Std nTPM: 29.3
Median nTPM: 186.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 307.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 260.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 259.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 249.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 247.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 240.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 235.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 234.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 229.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 229.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 227.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.5
FF:10158-103A5 76 years, female 110.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 200.2
Pig sample Sample description nTPM
Midbrain
nTPM: 200.3
Samples: 4

Max nTPM: 234.2
Min nTPM: 158.8
Sample A Female 221.4
Sample B Female 158.8
Sample C Male 234.2
Sample D Male 186.6
Periaqueductal gray
nTPM: 143.0
Samples: 3

Max nTPM: 165.6
Min nTPM: 129.7
Sample B Female 133.7
Sample C Male 165.6
Sample D Male 129.7
Substantia nigra
nTPM: 173.2
Samples: 4

Max nTPM: 211.8
Min nTPM: 131.4
Sample A Female 211.8
Sample B Female 131.4
Sample C Male 196.9
Sample D Male 152.7
Superior colliculi
nTPM: 198.5
Samples: 4

Max nTPM: 230.2
Min nTPM: 147.5
Sample A Female 230.2
Sample B Female 147.5
Sample C Male 221.1
Sample D Male 195.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 276.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 276.9
Samples: 4

Max nTPM: 302.9
Min nTPM: 257.5
Sample A Male 302.9
Sample B Male 257.5
Sample C Female 259.3
Sample D Female 288.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.0
513491 Antisense, RP_040810_01_H11, Mouse strain C57BL/6J (56 days, male) 19.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.