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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:214.6 nTPM
HPA:214.6 nTPM
GTEx:250.0 nTPM
FANTOM5:101.8 Scaled Tags Per Million
Pig:158.8 nTPM
Mouse:457.0 nTPM
Allen mouse:28.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 214.6
Sample id Sample description nTPM
Amygdala
nTPM: 206.6
2814 Male, age 76, right hemisphere 214.7
2514 Male, age 75, right hemisphere 206.4
2517 Female, age 94, left hemisphere 205.6
2695 Female, age 67, right hemisphere 204.2
1987 Female, age 91, left hemisphere 202.2
Basal amygdala
nTPM: 209.6
2685 Female, age 94, left hemisphere 227.0
2243 Female, age 91, right hemisphere 214.3
2110 Male, age 80, left hemisphere 213.5
2609 Male, age 75, right hemisphere 207.9
1955 Male, age 76, both hemispheres 207.8
2827 Female, age 67, right hemisphere 186.9
Central amygdala
nTPM: 206.5
2826 Female, age 94, left hemisphere 216.7
2239 Male, age 80, left hemisphere 210.9
1905 Male, age 76, both hemispheres 205.8
2701 Female, age 91, right hemisphere 200.8
2515 Male, age 75, right hemisphere 198.2
Corticomedial amygdala
nTPM: 207.0
2829 Male, age 80, left hemisphere 231.0
2242 Female, age 91, right hemisphere 212.3
2429 Female, age 94, left hemisphere 208.2
2240 Male, age 76, both hemispheres 206.8
2428 Male, age 75, right hemisphere 198.8
2535 Female, age 67, right hemisphere 184.9
Lateral amygdala
nTPM: 202.1
2534 Female, age 94, left hemisphere 217.7
1883 Male, age 76, both hemispheres 211.2
2516 Male, age 75, right hemisphere 202.8
2255 Female, age 91, right hemisphere 200.2
2256 Male, age 80, left hemisphere 194.8
2830 Female, age 67, right hemisphere 185.8
Stria terminalis, bed nucleus
nTPM: 214.6
1974 Female, age 91, both hemispheres 230.7
2486 Female, age 94, both hemispheres 215.7
2201 Male, age 74, unknown 197.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 250.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 250.0
Samples: 152

Max nTPM: 517.5
Min nTPM: 109.9
Std nTPM: 62.9
Median nTPM: 232.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 517.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 429.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 428.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 419.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 418.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 404.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 385.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 376.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 349.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 344.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 341.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 341.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 339.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 334.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 332.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 331.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 329.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 322.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 322.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 320.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 315.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 314.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 312.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 309.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 308.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 308.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 304.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 298.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 297.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 297.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 297.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 295.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 293.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 288.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 285.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 285.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 283.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 282.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 281.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 281.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 278.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 278.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 277.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 272.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 271.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 271.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 265.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 264.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 263.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 262.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 262.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 262.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 262.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 261.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 261.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 260.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 257.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 256.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 255.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 253.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 253.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 253.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 252.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 250.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 250.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 247.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 245.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 244.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 243.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 242.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 237.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 237.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 234.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 233.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 232.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 232.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 232.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 231.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 231.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 231.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 231.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 230.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 229.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 229.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 229.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 228.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 228.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 228.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 227.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 227.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 226.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 226.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 225.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 225.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 224.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 224.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 223.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 223.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 223.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 222.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 222.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 221.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 221.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 218.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 217.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 217.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 215.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 215.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 214.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 213.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 212.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 212.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 212.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 210.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 210.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 208.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 208.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 207.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 206.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 206.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 206.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 205.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 204.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 201.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 200.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 199.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 195.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 194.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 192.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 190.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 187.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 187.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 186.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 184.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 184.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 183.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 182.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 180.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 180.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 178.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 177.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 176.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 173.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 165.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 161.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 159.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 154.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 152.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 149.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 149.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 109.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 101.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 101.8
FF:10151-102I7 76 years, female 101.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.8
Pig sample Sample description nTPM
Amygdala
nTPM: 158.8
Samples: 4

Max nTPM: 232.9
Min nTPM: 120.0
Sample A Female 232.9
Sample B Female 120.0
Sample C Male 134.7
Sample D Male 147.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 457.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 457.0
Samples: 4

Max nTPM: 485.6
Min nTPM: 444.5
Sample A Male 451.9
Sample B Male 444.5
Sample C Female 485.6
Sample D Female 445.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 28.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.5
513491 Antisense, RP_040810_01_H11, Mouse strain C57BL/6J (56 days, male) 28.5

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