We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MLF2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MLF2
BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:223.6 nTPM
HPA:223.6 nTPM
FANTOM5:136.5 Scaled Tags Per Million
Pig:139.7 nTPM
Mouse:518.2 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 223.6
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 201.8
1920 Male, age 76, both hemispheres 201.8
Anterior funiculus (white matter)
nTPM: 203.2
2193 Male, age 75, both hemispheres 217.1
2819 Male, age 47, both hemispheres 215.7
2818 Female, age 79, both hemispheres 194.8
2734 Male, age 80, both hemispheres 185.0
Area striata (white matter)
nTPM: 204.9
2258 Female, age 91, left hemisphere 204.9
Cerebellar white matter
nTPM: 191.6
2105 Male, age 74, right hemisphere 204.7
1931 Female, age 91, left hemisphere 194.6
2773 Female, age 85, right hemisphere 189.4
2174 Male, age 61, right hemisphere 187.7
1864 Male, age 80, left hemisphere 187.0
1837 Male, age 76, left hemisphere 186.3
Corpus callosum, genu (white matter)
nTPM: 195.3
1886 Female, age 67, right hemisphere 218.6
2771 Male, age 75, left hemisphere 210.6
1849 Female, age 91, right hemisphere 192.9
1887 Male, age 76, left hemisphere 184.9
1934 Male, age 61, right hemisphere 184.9
1885 Female, age 94, left hemisphere 179.9
Corpus callosum, splenium (white matter)
nTPM: 199.1
2847 Female, age 67, right hemisphere 219.1
2104 Male, age 75, left hemisphere 210.2
2238 Female, age 94, right hemisphere 183.9
1946 Male, age 76, left hemisphere 183.1
Dorsal funiculus (white matter)
nTPM: 203.5
2128 Male, age 75, both hemispheres 217.4
2810 Male, age 90, both hemispheres 208.5
2812 Male, age 66, both hemispheres 202.9
2817 Male, age 47, both hemispheres 197.1
2064 Female, age 79, both hemispheres 191.8
Lateral funiculus (white matter)
nTPM: 198.7
2192 Male, age 75, both hemispheres 203.6
2099 Male, age 90, both hemispheres 203.3
2094 Female, age 79, both hemispheres 194.8
2294 Male, age 66, both hemispheres 193.3
Occipital cortex (white matter)
nTPM: 220.8
2259 Male, age 75, midline 231.1
2257 Female, age 67, both hemispheres 210.5
Parahippocampal cortex (white matter)
nTPM: 205.9
2157 Female, age 91, both hemispheres 205.9
Parieto-temporal junction (white matter)
nTPM: 192.4
1999 Female, age 67, right hemisphere 206.4
2469 Male, age 75, right hemisphere 203.4
1935 Female, age 94, right hemisphere 190.2
2770 Female, age 91, right hemisphere 186.7
2774 Male, age 61, right hemisphere 185.5
2121 Male, age 76, left hemisphere 182.3
Somatomor cortex, precentral gyrus (white matter)
nTPM: 220.1
2439 Male, age 75, right hemisphere 220.1
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 223.6
2623 Male, age 75, right hemisphere 223.6
Temporal white matter
nTPM: 191.0
2254 Male, age 75, right hemisphere 207.7
2736 Female, age 91, right hemisphere 199.3
2523 Female, age 94, left hemisphere 191.7
1801 Male, age 76, left hemisphere 186.5
2524 Female, age 85, left hemisphere 169.8

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 136.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 136.5
FF:10042-101F6 24-68 years, mixed 136.5

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.7
Pig sample Sample description nTPM
Corpus callosum
nTPM: 139.7
Samples: 4

Max nTPM: 150.0
Min nTPM: 130.7
Sample A Female 139.7
Sample B Female 138.3
Sample C Male 150.0
Sample D Male 130.7

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 518.2
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 518.2
Samples: 3

Max nTPM: 537.6
Min nTPM: 491.2
Sample A Male 491.2
Sample B Male 525.8
Sample D Female 537.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.