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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:86.3 nTPM
HPA:86.3 nTPM
GTEx:89.1 nTPM
FANTOM5:79.9 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:103.6 nTPM
Allen mouse:14.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 86.3
Sample id Sample description nTPM
Amygdala
nTPM: 82.0
2814 Male, age 76, right hemisphere 89.9
2514 Male, age 75, right hemisphere 81.7
2517 Female, age 94, left hemisphere 81.2
2695 Female, age 67, right hemisphere 79.5
1987 Female, age 91, left hemisphere 77.9
Basal amygdala
nTPM: 83.5
2685 Female, age 94, left hemisphere 90.1
2827 Female, age 67, right hemisphere 89.9
2609 Male, age 75, right hemisphere 84.6
1955 Male, age 76, both hemispheres 81.9
2110 Male, age 80, left hemisphere 77.5
2243 Female, age 91, right hemisphere 77.3
Central amygdala
nTPM: 83.3
1905 Male, age 76, both hemispheres 88.5
2701 Female, age 91, right hemisphere 85.4
2239 Male, age 80, left hemisphere 82.4
2515 Male, age 75, right hemisphere 81.3
2826 Female, age 94, left hemisphere 78.9
Corticomedial amygdala
nTPM: 78.1
2535 Female, age 67, right hemisphere 85.2
2429 Female, age 94, left hemisphere 83.1
2428 Male, age 75, right hemisphere 80.2
2829 Male, age 80, left hemisphere 77.4
2240 Male, age 76, both hemispheres 71.9
2242 Female, age 91, right hemisphere 71.1
Lateral amygdala
nTPM: 86.3
2256 Male, age 80, left hemisphere 88.5
2516 Male, age 75, right hemisphere 88.4
2255 Female, age 91, right hemisphere 87.9
2830 Female, age 67, right hemisphere 87.5
1883 Male, age 76, both hemispheres 86.2
2534 Female, age 94, left hemisphere 79.3
Stria terminalis, bed nucleus
nTPM: 76.3
2486 Female, age 94, both hemispheres 78.4
2201 Male, age 74, unknown 76.2
1974 Female, age 91, both hemispheres 74.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 89.1
Samples: 152

Max nTPM: 178.1
Min nTPM: 19.2
Std nTPM: 24.3
Median nTPM: 85.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 178.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 152.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 150.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 144.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 142.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 137.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 128.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 127.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 126.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 125.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 124.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 123.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 123.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 122.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 121.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 120.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 119.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 118.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 117.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 115.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 114.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 114.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 113.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 112.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 112.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 112.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 110.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 110.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 109.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 109.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 109.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 108.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 108.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 107.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 107.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 105.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 105.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 105.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 104.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 102.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 99.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 98.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 97.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 97.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 95.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 94.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 93.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 93.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 92.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 91.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 91.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 90.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 90.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 90.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 89.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 88.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 86.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 86.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 86.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 85.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 85.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 85.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 85.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 84.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 84.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 82.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 82.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 82.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 81.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 81.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 81.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 80.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 80.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 79.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 79.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 78.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 78.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 78.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 77.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 77.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 77.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 76.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 76.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 76.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 76.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 76.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 74.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 74.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 74.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 74.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 73.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 73.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 73.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 72.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 71.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 71.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 70.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 70.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 70.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 70.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 69.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 69.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 68.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 68.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 67.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 67.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 67.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 66.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 65.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 65.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 64.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 64.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 63.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 63.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 59.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 59.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 58.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 57.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 57.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 57.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 56.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 56.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 55.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 53.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 51.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 50.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 50.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 19.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 79.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 79.9
FF:10151-102I7 76 years, female 79.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.8
Pig sample Sample description nTPM
Amygdala
nTPM: 40.8
Samples: 4

Max nTPM: 48.6
Min nTPM: 32.9
Sample A Female 40.1
Sample B Female 48.6
Sample C Male 41.7
Sample D Male 32.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 103.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 103.5
Samples: 4

Max nTPM: 124.2
Min nTPM: 92.2
Sample A Male 97.6
Sample B Male 100.1
Sample C Female 124.2
Sample D Female 92.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.5
67936208 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 14.5
68196977 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 5.1

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