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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:91.3 nTPM
HPA:91.3 nTPM
GTEx:152.9 nTPM
FANTOM5:110.0 Scaled Tags Per Million
Pig:130.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 91.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 85.5
2194 Female, age 79, both hemispheres 91.4
2816 Male, age 47, midline 89.6
1981 Female, age 72, midline 88.4
2048 Male, age 55, midline 81.2
2565 Male, age 75, midline 76.9
Cervical spinal cord, dorsal horn
nTPM: 90.7
2296 Male, age 66, both hemispheres 116.6
2173 Female, age 72, unknown 103.2
1877 Male, age 55, unknown 86.8
2721 Male, age 90, both hemispheres 83.8
2069 Male, age 47, both hemispheres 80.8
2297 Male, age 75, both hemispheres 73.1
Cervical spinal cord, ventral horn
nTPM: 91.3
2820 Female, age 79, both hemispheres 105.9
2068 Male, age 55, unknown 102.7
2098 Female, age 72, unknown 87.4
2295 Male, age 66, both hemispheres 84.2
2480 Male, age 75, both hemispheres 84.0
2809 Male, age 90, both hemispheres 83.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 152.9
Samples: 159

Max nTPM: 297.1
Min nTPM: 40.6
Std nTPM: 48.6
Median nTPM: 151.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 297.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 286.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 260.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 249.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 243.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 241.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 240.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 238.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 237.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 234.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 234.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 231.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 231.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 229.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 225.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 224.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 219.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 219.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 218.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 211.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 208.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 207.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 206.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 201.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 200.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 197.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 196.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 196.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 194.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 194.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 193.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 193.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 191.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 191.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 190.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 188.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 188.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 188.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 183.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 183.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 179.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 178.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 178.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 177.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 176.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 176.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 175.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 175.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 175.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 175.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 174.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 172.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 172.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 170.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 170.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 170.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 169.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 169.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 168.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 168.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 168.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 165.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 163.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 162.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 161.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 160.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 158.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 156.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 156.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 156.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 154.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 154.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 154.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 153.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 153.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 152.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 152.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 151.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 151.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 151.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 149.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 148.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 148.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 147.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 147.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 146.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 146.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 146.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 143.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 142.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 142.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 141.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 140.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 139.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 139.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 139.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 138.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 138.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 138.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 137.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 134.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 134.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 133.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 130.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 128.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 128.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 128.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 126.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 125.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 124.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 124.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 123.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 121.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 121.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 120.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 117.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 116.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 115.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 115.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 114.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 113.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 113.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 112.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 112.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 110.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 110.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 110.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 109.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 107.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 106.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 106.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 106.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 105.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 104.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 102.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 100.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 100.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 100.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 97.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 96.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 92.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 89.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 89.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 88.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 88.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 82.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 78.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 77.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 77.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 62.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 62.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 59.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 59.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 48.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 40.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 110.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 110.0
FF:10181-103D1 60 years, female 127.5
FF:10159-103A6 76 years, female 92.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 130.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 118.9
Samples: 4

Max nTPM: 124.0
Min nTPM: 109.1
Sample A Female 109.1
Sample B Female 120.1
Sample C Male 122.3
Sample D Male 124.0
Ventral spinal cord
nTPM: 130.6
Samples: 4

Max nTPM: 140.4
Min nTPM: 123.5
Sample A Female 127.9
Sample B Female 123.5
Sample C Male 130.4
Sample D Male 140.4

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