MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:106.6 nTPM
HPA:106.6 nTPM
GTEx:96.9 nTPM
FANTOM5:168.6 Scaled Tags Per Million
Pig:99.3 nTPM
Mouse:69.4 nTPM
Allen mouse:15.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.6
2411 Female, age 72, unknown 104.1
1833 Male, age 53, unknown 102.5
1830 Male, age 51, unknown 102.3
1870 Female, age 42, unknown 99.8
2019 Male, age 18, unknown 99.4
2586 Male, age 75, left hemisphere 94.6
2828 Female, age 72, unknown 93.7
2219 Male, age 76, both hemispheres 89.9
1827 Male, age 72, unknown 88.1
2666 Male, age 74, left hemisphere 81.6
Dorsal raphe nucleus
nTPM: 85.7
2750 Male, age 76, both hemispheres 106.1
1828 Male, age 53, unknown 85.1
2047 Male, age 72, unknown 81.7
2016 Female, age 72, unknown 81.5
2298 Female, age 72, unknown 74.2
Inferior colliculus
nTPM: 82.2
2849 Male, age 72, unknown 84.5
1890 Male, age 53, unknown 83.7
1848 Female, age 42, unknown 82.9
2097 Female, age 72, unknown 77.8
Median raphe nucleus
nTPM: 83.1
2220 Male, age 76, midline 83.1
Pedunculopontine tegmental nucleus
nTPM: 88.4
2334 Male, age 80, both hemispheres 88.7
1921 Female, age 85, both hemispheres 88.3
2338 Male, age 61, both hemispheres 88.1
Periaquaductal grey, anterior
nTPM: 78.4
1947 Male, age 18, unknown 81.6
2502 Female, age 75, unknown 77.5
1795 Male, age 51, unknown 76.1
Periaquaductal grey, dorsal
nTPM: 76.8
2464 Female, age 72, unknown 86.9
1831 Male, age 72, unknown 78.6
2850 Male, age 76, both hemispheres 74.0
1840 Male, age 53, unknown 67.8
Periaquaductal grey, lateral
nTPM: 78.9
2272 Male, age 74, both hemispheres 81.2
2053 Male, age 18, unknown 79.2
2140 Male, age 76, both hemispheres 76.4
Pretectal area
nTPM: 84.8
2407 Male, age 75, both hemispheres 96.3
2316 Male, age 76, right hemisphere 95.7
1815 Male, age 53, unknown 92.8
1817 Female, age 42, unknown 86.9
2825 Male, age 18, unknown 85.2
2667 Female, age 75, unknown 85.0
2007 Male, age 72, unknown 84.1
2224 Female, age 72, unknown 80.5
2273 Male, age 74, both hemispheres 79.3
1944 Female, age 72, unknown 75.6
1816 Male, age 51, unknown 71.5
Red nucleus
nTPM: 106.6
1904 Male, age 53, unknown 115.6
1865 Male, age 51, unknown 115.2
2823 Male, age 76, right hemisphere 114.5
2769 Male, age 72, unknown 113.0
2227 Male, age 72, unknown 111.0
2588 Male, age 74, left hemisphere 109.0
2785 Male, age 18, unknown 106.7
1954 Female, age 42, unknown 104.9
1821 Female, age 72, unknown 102.8
2503 Female, age 72, unknown 100.8
2725 Female, age 75, unknown 94.9
2584 Male, age 75, left hemisphere 90.5
Substantia nigra
nTPM: 79.7
2583 Male, age 75, right hemisphere 95.5
2590 Female, age 75, unknown 86.3
1851 Male, age 51, unknown 83.5
1889 Female, age 72, unknown 82.0
2409 Female, age 72, unknown 81.3
2699 Male, age 18, unknown 81.0
1941 Male, age 53, unknown 75.6
2665 Male, age 74, both hemispheres 74.8
1916 Female, age 42, unknown 70.3
2241 Male, age 72, unknown 67.0
Superior colliculus
nTPM: 89.8
1995 Male, age 72, unknown 104.7
1913 Female, age 42, unknown 102.5
1895 Male, age 76, right hemisphere 99.7
1839 Male, age 51, unknown 89.5
2668 Female, age 75, unknown 89.5
2664 Male, age 75, both hemispheres 88.0
2587 Male, age 74, left hemisphere 87.4
1796 Male, age 53, unknown 84.1
2261 Male, age 18, unknown 78.1
2087 Female, age 72, unknown 74.1
Ventral tegmental area
nTPM: 85.1
2223 Female, age 72, unknown 95.3
2410 Female, age 72, unknown 90.2
1942 Male, age 51, unknown 85.8
2021 Male, age 53, unknown 83.3
1915 Female, age 42, unknown 78.1
2218 Male, age 76, both hemispheres 78.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.9
Samples: 139

Max nTPM: 281.7
Min nTPM: 39.8
Std nTPM: 35.9
Median nTPM: 91.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 281.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 250.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 185.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 176.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 163.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 162.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 160.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 158.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 158.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 152.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 152.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.6
FF:10158-103A5 76 years, female 168.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 99.3
Pig sample Sample description nTPM
Midbrain
nTPM: 99.4
Samples: 4

Max nTPM: 170.7
Min nTPM: 64.8
Sample A Female 170.7
Sample B Female 90.2
Sample C Male 71.7
Sample D Male 64.8
Periaqueductal gray
nTPM: 67.6
Samples: 3

Max nTPM: 74.1
Min nTPM: 62.0
Sample B Female 74.1
Sample C Male 62.0
Sample D Male 66.6
Substantia nigra
nTPM: 98.6
Samples: 4

Max nTPM: 134.4
Min nTPM: 69.9
Sample A Female 100.9
Sample B Female 69.9
Sample C Male 89.3
Sample D Male 134.4
Superior colliculi
nTPM: 89.6
Samples: 4

Max nTPM: 99.5
Min nTPM: 79.1
Sample A Female 92.2
Sample B Female 79.1
Sample C Male 87.6
Sample D Male 99.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 76.3
Min nTPM: 65.7
Sample A Male 76.3
Sample B Male 65.7
Sample C Female 66.5
Sample D Female 69.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.2
67936208 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 15.2
68196977 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 7.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.