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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:113.6 nTPM
HPA:113.6 nTPM
GTEx:136.5 nTPM
FANTOM5:96.8 Scaled Tags Per Million
Pig:49.1 nTPM
Mouse:106.6 nTPM
Allen mouse:2.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 113.6
Sample id Sample description nTPM
Amygdala
nTPM: 113.6
1987 Female, age 91, left hemisphere 119.6
2514 Male, age 75, right hemisphere 117.2
2695 Female, age 67, right hemisphere 115.7
2814 Male, age 76, right hemisphere 108.9
2517 Female, age 94, left hemisphere 106.6
Basal amygdala
nTPM: 102.8
2609 Male, age 75, right hemisphere 120.7
1955 Male, age 76, both hemispheres 105.2
2110 Male, age 80, left hemisphere 104.8
2243 Female, age 91, right hemisphere 99.7
2685 Female, age 94, left hemisphere 98.1
2827 Female, age 67, right hemisphere 88.4
Central amygdala
nTPM: 104.8
2515 Male, age 75, right hemisphere 111.5
1905 Male, age 76, both hemispheres 107.1
2239 Male, age 80, left hemisphere 103.0
2701 Female, age 91, right hemisphere 101.3
2826 Female, age 94, left hemisphere 101.3
Corticomedial amygdala
nTPM: 102.8
2428 Male, age 75, right hemisphere 113.8
2829 Male, age 80, left hemisphere 105.6
2429 Female, age 94, left hemisphere 102.7
2242 Female, age 91, right hemisphere 101.0
2240 Male, age 76, both hemispheres 100.4
2535 Female, age 67, right hemisphere 93.3
Lateral amygdala
nTPM: 105.1
2516 Male, age 75, right hemisphere 119.8
1883 Male, age 76, both hemispheres 109.3
2256 Male, age 80, left hemisphere 107.7
2255 Female, age 91, right hemisphere 102.4
2534 Female, age 94, left hemisphere 99.9
2830 Female, age 67, right hemisphere 91.5
Stria terminalis, bed nucleus
nTPM: 97.2
2201 Male, age 74, unknown 100.2
2486 Female, age 94, both hemispheres 96.0
1974 Female, age 91, both hemispheres 95.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 136.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 136.5
Samples: 152

Max nTPM: 305.1
Min nTPM: 6.4
Std nTPM: 48.6
Median nTPM: 127.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 305.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 274.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 271.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 265.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 258.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 250.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 249.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 226.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 223.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 220.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 217.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 214.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 213.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 210.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 206.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 200.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 197.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 196.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 187.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 187.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 187.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 183.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 183.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 179.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 177.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 177.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 174.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 174.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 173.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 172.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 172.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 171.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 169.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 168.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 168.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 166.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 165.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 163.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 161.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 161.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 160.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 159.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 156.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 155.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 155.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 151.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 151.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 150.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 150.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 147.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 147.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 146.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 145.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 144.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 143.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 142.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 141.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 141.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 140.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 140.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 139.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 139.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 137.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 135.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 134.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 133.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 133.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 132.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 131.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 130.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 130.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 129.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 129.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 129.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 128.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 126.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 126.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 125.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 125.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 124.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 123.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 122.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 121.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 121.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 120.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 120.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 120.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 119.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 119.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 118.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 117.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 116.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 116.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 116.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 114.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 114.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 113.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 112.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 112.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 111.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 110.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 109.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 107.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 106.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 105.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 104.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 104.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 103.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 103.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 102.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 102.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 100.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 100.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 99.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 99.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 98.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 98.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 98.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 97.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 96.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 96.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 95.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 94.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 94.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 90.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 85.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 85.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 83.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 82.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 82.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 79.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 77.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 74.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 73.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 70.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 65.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 58.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 50.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 47.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 42.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 96.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.8
FF:10151-102I7 76 years, female 96.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.1
Pig sample Sample description nTPM
Amygdala
nTPM: 49.1
Samples: 4

Max nTPM: 52.7
Min nTPM: 43.1
Sample A Female 50.4
Sample B Female 52.7
Sample C Male 50.0
Sample D Male 43.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 106.6
Samples: 4

Max nTPM: 117.3
Min nTPM: 96.3
Sample A Male 96.3
Sample B Male 100.4
Sample C Female 117.3
Sample D Female 112.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
100143511 Antisense, RP_110407_01_E08, Mouse strain C57BL/6J (56 days, male) 2.9

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