MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:113.9 nTPM
HPA:113.9 nTPM
GTEx:126.7 nTPM
FANTOM5:215.1 Scaled Tags Per Million
Pig:89.0 nTPM
Mouse:87.8 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.5
2828 Female, age 72, unknown 125.3
1870 Female, age 42, unknown 119.8
2411 Female, age 72, unknown 111.3
1833 Male, age 53, unknown 108.6
1827 Male, age 72, unknown 107.1
2586 Male, age 75, left hemisphere 102.9
1830 Male, age 51, unknown 102.3
2019 Male, age 18, unknown 100.6
2666 Male, age 74, left hemisphere 99.5
2219 Male, age 76, both hemispheres 97.7
Dorsal raphe nucleus
nTPM: 113.9
2298 Female, age 72, unknown 125.5
2016 Female, age 72, unknown 121.8
2750 Male, age 76, both hemispheres 110.3
1828 Male, age 53, unknown 108.1
2047 Male, age 72, unknown 103.5
Inferior colliculus
nTPM: 103.9
2097 Female, age 72, unknown 106.4
1848 Female, age 42, unknown 105.8
2849 Male, age 72, unknown 103.3
1890 Male, age 53, unknown 100.1
Median raphe nucleus
nTPM: 104.7
2220 Male, age 76, midline 104.7
Pedunculopontine tegmental nucleus
nTPM: 101.3
1921 Female, age 85, both hemispheres 110.4
2334 Male, age 80, both hemispheres 106.5
2338 Male, age 61, both hemispheres 86.8
Periaquaductal grey, anterior
nTPM: 105.3
1795 Male, age 51, unknown 108.8
2502 Female, age 75, unknown 103.9
1947 Male, age 18, unknown 103.1
Periaquaductal grey, dorsal
nTPM: 109.9
2850 Male, age 76, both hemispheres 117.8
2464 Female, age 72, unknown 108.6
1840 Male, age 53, unknown 108.2
1831 Male, age 72, unknown 105.0
Periaquaductal grey, lateral
nTPM: 113.5
2140 Male, age 76, both hemispheres 121.1
2053 Male, age 18, unknown 120.6
2272 Male, age 74, both hemispheres 98.9
Pretectal area
nTPM: 107.1
2224 Female, age 72, unknown 116.0
2316 Male, age 76, right hemisphere 115.5
2273 Male, age 74, both hemispheres 114.9
2667 Female, age 75, unknown 112.1
2825 Male, age 18, unknown 110.5
1815 Male, age 53, unknown 110.2
1944 Female, age 72, unknown 102.5
1817 Female, age 42, unknown 102.1
2407 Male, age 75, both hemispheres 100.6
2007 Male, age 72, unknown 97.4
1816 Male, age 51, unknown 96.0
Red nucleus
nTPM: 111.7
1904 Male, age 53, unknown 121.5
2769 Male, age 72, unknown 120.6
2503 Female, age 72, unknown 120.2
2227 Male, age 72, unknown 118.4
1821 Female, age 72, unknown 117.0
2725 Female, age 75, unknown 113.5
1954 Female, age 42, unknown 113.1
1865 Male, age 51, unknown 112.9
2823 Male, age 76, right hemisphere 110.0
2785 Male, age 18, unknown 104.4
2588 Male, age 74, left hemisphere 96.9
2584 Male, age 75, left hemisphere 91.3
Substantia nigra
nTPM: 103.1
2699 Male, age 18, unknown 117.3
1851 Male, age 51, unknown 109.7
2409 Female, age 72, unknown 106.1
1889 Female, age 72, unknown 104.7
1916 Female, age 42, unknown 103.4
2583 Male, age 75, right hemisphere 101.0
2590 Female, age 75, unknown 100.2
2241 Male, age 72, unknown 98.3
1941 Male, age 53, unknown 96.4
2665 Male, age 74, both hemispheres 94.5
Superior colliculus
nTPM: 109.5
1995 Male, age 72, unknown 126.8
1913 Female, age 42, unknown 126.0
1796 Male, age 53, unknown 114.1
1839 Male, age 51, unknown 107.7
2587 Male, age 74, left hemisphere 107.1
2668 Female, age 75, unknown 105.0
1895 Male, age 76, right hemisphere 104.8
2087 Female, age 72, unknown 103.4
2664 Male, age 75, both hemispheres 100.3
2261 Male, age 18, unknown 99.8
Ventral tegmental area
nTPM: 107.2
1942 Male, age 51, unknown 112.2
2410 Female, age 72, unknown 112.0
1915 Female, age 42, unknown 108.8
2021 Male, age 53, unknown 105.4
2223 Female, age 72, unknown 102.5
2218 Male, age 76, both hemispheres 102.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 126.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.7
Samples: 139

Max nTPM: 257.9
Min nTPM: 33.7
Std nTPM: 40.9
Median nTPM: 119.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 257.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 247.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 224.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 212.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 205.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 205.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 204.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 201.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 195.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 194.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 191.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 215.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 215.1
FF:10158-103A5 76 years, female 215.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.0
Pig sample Sample description nTPM
Midbrain
nTPM: 89.0
Samples: 4

Max nTPM: 175.6
Min nTPM: 41.8
Sample A Female 175.6
Sample B Female 66.6
Sample C Male 71.9
Sample D Male 41.8
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 62.0
Min nTPM: 51.8
Sample B Female 62.0
Sample C Male 58.2
Sample D Male 51.8
Substantia nigra
nTPM: 78.2
Samples: 4

Max nTPM: 99.7
Min nTPM: 56.6
Sample A Female 87.8
Sample B Female 56.6
Sample C Male 68.7
Sample D Male 99.7
Superior colliculi
nTPM: 71.5
Samples: 4

Max nTPM: 83.3
Min nTPM: 42.6
Sample A Female 83.3
Sample B Female 42.6
Sample C Male 82.3
Sample D Male 77.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 97.9
Min nTPM: 79.3
Sample A Male 97.9
Sample B Male 79.3
Sample C Female 84.5
Sample D Female 89.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
100143511 Antisense, RP_110407_01_E08, Mouse strain C57BL/6J (56 days, male) 3.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.