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MYL6
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:869.2 nTPM
HPA:869.2 nTPM
FANTOM5:364.0 Scaled Tags Per Million
Pig:428.8 nTPM
Allen mouse:13.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 869.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 839.1
2188 Female, age 91, both hemispheres 860.7
2090 Male, age 80, both hemispheres 858.5
2301 Female, age 85, both hemispheres 821.9
1984 Male, age 76, both hemispheres 815.1
Dorsal cochlear nucleus
nTPM: 845.7
2802 Male, age 74, right hemisphere 868.1
2187 Female, age 91, both hemispheres 855.5
2370 Male, age 61, both hemispheres 846.1
2378 Male, age 80, both hemispheres 844.8
2058 Male, age 76, both hemispheres 813.9
Dorsal tegmental nucleus
nTPM: 865.3
2358 Male, age 61, both hemispheres 942.2
2083 Male, age 80, both hemispheres 867.8
2326 Male, age 74, both hemispheres 834.3
1936 Male, age 76, left hemisphere 817.0
Dorsolateral tegmental area
nTPM: 857.1
2337 Male, age 61, both hemispheres 939.0
2751 Female, age 85, both hemispheres 854.9
2654 Male, age 80, both hemispheres 853.2
2141 Male, age 76, both hemispheres 825.7
2360 Male, age 74, both hemispheres 812.8
Kolliker-Fuse nucleus
nTPM: 860.4
2793 Female, age 91, left hemisphere 863.8
2315 Male, age 76, right hemisphere 858.8
2163 Male, age 80, both hemispheres 858.4
Lateral lemniscal nuclei
nTPM: 826.5
2169 Male, age 76, both hemispheres 856.6
2453 Male, age 74, right hemisphere 841.9
2746 Female, age 85, left hemisphere 837.9
2320 Female, age 91, left hemisphere 806.8
2036 Male, age 80, both hemispheres 789.1
Lateral parabrachial nucleus
nTPM: 858.8
2139 Female, age 85, right hemisphere 881.0
2792 Male, age 76, both hemispheres 865.8
2790 Male, age 61, both hemispheres 848.4
2013 Male, age 80, both hemispheres 839.9
Lateral vestibular nucleus
nTPM: 847.1
2311 Male, age 80, both hemispheres 848.1
2184 Male, age 76, both hemispheres 846.1
Locus coeruleus
nTPM: 843.0
2123 Female, age 91, both hemispheres 868.2
2788 Male, age 74, unknown 855.2
2014 Male, age 55, unknown 852.9
2720 Male, age 74, both hemispheres 841.6
2162 Male, age 80, both hemispheres 829.9
2317 Female, age 72, unknown 829.2
1980 Male, age 76, both hemispheres 823.9
Medial olivary nucleus
nTPM: 869.2
1943 Male, age 61, both hemispheres 892.0
2851 Male, age 80, both hemispheres 872.3
2138 Female, age 91, both hemispheres 857.4
1962 Male, age 76, both hemispheres 855.2
Medial parabrachial nucleus
nTPM: 847.9
2170 Female, age 91, both hemispheres 871.0
2854 Male, age 80, both hemispheres 864.5
2156 Male, age 61, both hemispheres 840.6
2463 Female, age 85, right hemisphere 832.3
2786 Male, age 76, both hemispheres 831.1
Medial periolivary nuclei
nTPM: 842.5
2171 Female, age 85, both hemispheres 861.0
2063 Male, age 76, both hemispheres 857.3
2791 Male, age 74, right hemisphere 837.7
2458 Female, age 91, both hemispheres 832.2
2081 Male, age 80, both hemispheres 824.2
Motor facial nucleus
nTPM: 844.6
2697 Female, age 85, both hemispheres 874.7
2365 Male, age 74, right hemisphere 855.9
2062 Male, age 76, both hemispheres 847.8
2795 Female, age 91, both hemispheres 838.7
2126 Male, age 61, both hemispheres 834.0
2327 Male, age 80, both hemispheres 816.7
Motor trigeminal nucleus
nTPM: 836.0
2335 Male, age 61, both hemispheres 858.1
2079 Male, age 80, both hemispheres 838.3
2560 Male, age 74, both hemispheres 835.5
2321 Female, age 91, both hemispheres 824.3
2309 Male, age 76, both hemispheres 823.7
Nuclei of the trapezoid body
nTPM: 833.6
1983 Male, age 76, both hemispheres 866.4
2735 Female, age 85, both hemispheres 841.6
2159 Male, age 61, both hemispheres 831.0
2166 Male, age 80, both hemispheres 825.7
2368 Female, age 91, both hemispheres 803.5
Paramedian reticular nucleus
nTPM: 845.5
2050 Female, age 85, both hemispheres 875.4
2052 Male, age 76, both hemispheres 843.9
2057 Male, age 80, both hemispheres 837.2
2313 Male, age 61, both hemispheres 825.5
Pontine nuclei
nTPM: 846.0
2787 Female, age 85, both hemispheres 914.2
1863 Male, age 55, unknown 875.8
2109 Female, age 72, unknown 842.0
2454 Male, age 74, left hemisphere 830.3
2115 Male, age 80, left hemisphere 829.7
1968 Male, age 76, left hemisphere 829.3
2319 Female, age 91, both hemispheres 828.9
2727 Male, age 61, right hemisphere 817.8
Pontine raphe nucleus
nTPM: 845.5
2122 Female, age 85, midline 853.1
2853 Male, age 76, midline 837.8
Posteroventral cochlear nucleus
nTPM: 855.0
2341 Male, age 80, both hemispheres 885.4
2135 Female, age 91, both hemispheres 866.8
2371 Male, age 61, both hemispheres 844.1
2070 Male, age 76, both hemispheres 840.1
2752 Female, age 85, both hemispheres 838.6
Principal sensory trigeminal nucleus
nTPM: 829.9
2367 Female, age 91, left hemisphere 837.4
2158 Male, age 61, both hemispheres 834.0
2324 Male, age 76, both hemispheres 833.1
2008 Male, age 80, left hemisphere 815.0
Reticular pontine nucleus, caudal
nTPM: 839.1
2092 Male, age 76, both hemispheres 867.9
2559 Male, age 74, both hemispheres 844.2
2457 Female, age 91, both hemispheres 831.5
2332 Male, age 80, right hemisphere 812.6
Reticular pontine nucleus, oral
nTPM: 849.6
1939 Male, age 80, both hemispheres 867.7
2366 Female, age 91, both hemispheres 848.7
2167 Male, age 76, both hemispheres 848.2
2012 Female, age 85, both hemispheres 846.7
2361 Male, age 74, both hemispheres 836.7
Reticulotegmental nucleus
nTPM: 842.6
2452 Male, age 74, both hemispheres 846.2
2322 Female, age 91, both hemispheres 843.3
2325 Male, age 76, both hemispheres 840.4
2333 Male, age 80, both hemispheres 840.4
Spinal trigeminal nucleus, oral
nTPM: 835.3
2164 Male, age 80, both hemispheres 868.0
2737 Female, age 85, both hemispheres 832.4
1978 Male, age 76, both hemispheres 805.4
Subcoeruleus area
nTPM: 838.5
1958 Male, age 80, both hemispheres 849.4
2323 Female, age 91, left hemisphere 843.0
2369 Female, age 85, left hemisphere 838.4
2451 Male, age 74, both hemispheres 837.8
2089 Male, age 76, left hemisphere 823.9
Superior olive
nTPM: 838.5
1875 Female, age 85, both hemispheres 859.7
2020 Male, age 76, both hemispheres 846.0
2364 Male, age 74, right hemisphere 839.2
2561 Female, age 91, both hemispheres 826.4
2329 Male, age 80, right hemisphere 821.4
Superior vestibular nucleus
nTPM: 843.3
2383 Male, age 74, both hemispheres 858.0
2015 Male, age 80, both hemispheres 844.6
2061 Male, age 76, both hemispheres 827.3
Ventral periolivary nuclei
nTPM: 847.1
2165 Male, age 80, both hemispheres 855.7
2130 Female, age 85, both hemispheres 851.7
2023 Male, age 76, both hemispheres 848.3
2794 Female, age 91, left hemisphere 832.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 851.7
2359 Male, age 61, both hemispheres 894.6
2840 Female, age 85, both hemispheres 869.5
1959 Male, age 76, both hemispheres 850.7
2161 Male, age 80, both hemispheres 844.5
2449 Male, age 74, both hemispheres 837.6
2456 Female, age 91, both hemispheres 813.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 364.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 364.0
FF:10182-103D2 60 years, female 435.8
FF:10165-103B3 76 years, female 292.2
Pons
Scaled Tags Per Million: 160.2
FF:10033-101E6 18-54 years, mixed 160.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 428.8
Pig sample Sample description nTPM
Pons
nTPM: 428.8
Samples: 4

Max nTPM: 544.8
Min nTPM: 309.5
Sample A Female 544.8
Sample B Female 309.5
Sample C Male 402.3
Sample D Male 458.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 13.0
68633312 Antisense, RP_050125_02_F08, Mouse strain C57BL/6J (56 days, male) 13.0

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