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MYL6
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:830.7 nTPM
HPA:830.7 nTPM
GTEx:702.3 nTPM
FANTOM5:198.5 Scaled Tags Per Million
Pig:248.4 nTPM
Mouse:1068.9 nTPM
Allen mouse:21.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 830.7
Sample id Sample description nTPM
Amygdala
nTPM: 830.7
2814 Male, age 76, right hemisphere 861.9
2695 Female, age 67, right hemisphere 849.8
2514 Male, age 75, right hemisphere 828.1
1987 Female, age 91, left hemisphere 812.5
2517 Female, age 94, left hemisphere 801.4
Basal amygdala
nTPM: 808.5
1955 Male, age 76, both hemispheres 824.8
2609 Male, age 75, right hemisphere 822.0
2827 Female, age 67, right hemisphere 810.1
2110 Male, age 80, left hemisphere 808.8
2243 Female, age 91, right hemisphere 796.9
2685 Female, age 94, left hemisphere 788.7
Central amygdala
nTPM: 819.1
1905 Male, age 76, both hemispheres 854.0
2826 Female, age 94, left hemisphere 832.1
2515 Male, age 75, right hemisphere 809.6
2239 Male, age 80, left hemisphere 804.5
2701 Female, age 91, right hemisphere 795.5
Corticomedial amygdala
nTPM: 808.0
2240 Male, age 76, both hemispheres 825.1
2428 Male, age 75, right hemisphere 818.5
2829 Male, age 80, left hemisphere 805.7
2242 Female, age 91, right hemisphere 805.4
2429 Female, age 94, left hemisphere 802.8
2535 Female, age 67, right hemisphere 790.5
Lateral amygdala
nTPM: 815.4
1883 Male, age 76, both hemispheres 842.7
2830 Female, age 67, right hemisphere 833.8
2516 Male, age 75, right hemisphere 825.0
2534 Female, age 94, left hemisphere 816.4
2256 Male, age 80, left hemisphere 795.9
2255 Female, age 91, right hemisphere 778.4
Stria terminalis, bed nucleus
nTPM: 794.2
1974 Female, age 91, both hemispheres 804.7
2201 Male, age 74, unknown 801.4
2486 Female, age 94, both hemispheres 776.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 702.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 702.3
Samples: 152

Max nTPM: 1711.7
Min nTPM: 314.9
Std nTPM: 208.8
Median nTPM: 660.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1711.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1585.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1268.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1262.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1257.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1191.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1177.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1140.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1090.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1076.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1041.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1015.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1015.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1000.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 990.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 988.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 976.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 960.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 929.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 926.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 903.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 863.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 863.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 862.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 858.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 840.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 823.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 816.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 814.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 812.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 810.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 810.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 792.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 787.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 777.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 762.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 756.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 746.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 742.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 741.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 740.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 740.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 735.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 733.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 730.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 726.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 716.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 716.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 710.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 710.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 708.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 706.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 703.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 701.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 700.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 699.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 699.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 697.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 695.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 692.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 689.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 688.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 686.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 686.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 684.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 683.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 680.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 678.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 674.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 671.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 667.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 665.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 664.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 664.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 662.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 662.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 658.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 656.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 655.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 652.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 650.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 648.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 647.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 645.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 639.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 637.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 637.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 634.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 632.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 632.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 630.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 629.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 626.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 626.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 624.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 623.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 622.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 621.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 615.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 614.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 610.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 609.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 608.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 608.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 607.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 603.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 601.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 599.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 596.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 595.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 595.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 593.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 593.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 592.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 591.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 586.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 569.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 569.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 568.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 566.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 562.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 559.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 544.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 538.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 535.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 530.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 529.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 528.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 527.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 525.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 523.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 521.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 521.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 519.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 514.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 514.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 513.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 506.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 500.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 500.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 485.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 463.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 462.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 461.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 458.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 450.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 446.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 436.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 435.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 422.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 413.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 314.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 198.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 198.5
FF:10151-102I7 76 years, female 198.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 248.4
Pig sample Sample description nTPM
Amygdala
nTPM: 248.4
Samples: 4

Max nTPM: 352.0
Min nTPM: 181.7
Sample A Female 352.0
Sample B Female 233.4
Sample C Male 226.4
Sample D Male 181.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1068.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1068.9
Samples: 4

Max nTPM: 1095.7
Min nTPM: 1034.5
Sample A Male 1034.5
Sample B Male 1074.2
Sample C Female 1095.7
Sample D Female 1071.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.3
68633312 Antisense, RP_050125_02_F08, Mouse strain C57BL/6J (56 days, male) 21.3

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