MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA:38.5 nTPM
GTEx:25.5 nTPM
FANTOM5:56.0 Scaled Tags Per Million
Pig:35.3 nTPM
Mouse:15.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.8
2586 Male, age 75, left hemisphere 39.9
1830 Male, age 51, unknown 37.7
1833 Male, age 53, unknown 36.1
1870 Female, age 42, unknown 35.6
2019 Male, age 18, unknown 35.4
2411 Female, age 72, unknown 34.9
2828 Female, age 72, unknown 33.9
2666 Male, age 74, left hemisphere 30.1
1827 Male, age 72, unknown 28.1
2219 Male, age 76, both hemispheres 26.4
Dorsal raphe nucleus
nTPM: 27.7
2750 Male, age 76, both hemispheres 32.6
2016 Female, age 72, unknown 29.9
1828 Male, age 53, unknown 27.9
2047 Male, age 72, unknown 25.5
2298 Female, age 72, unknown 22.7
Inferior colliculus
nTPM: 27.4
1890 Male, age 53, unknown 29.3
1848 Female, age 42, unknown 28.8
2849 Male, age 72, unknown 28.3
2097 Female, age 72, unknown 23.0
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Pedunculopontine tegmental nucleus
nTPM: 28.6
2334 Male, age 80, both hemispheres 30.2
2338 Male, age 61, both hemispheres 29.7
1921 Female, age 85, both hemispheres 25.8
Periaquaductal grey, anterior
nTPM: 28.4
2502 Female, age 75, unknown 32.5
1947 Male, age 18, unknown 27.0
1795 Male, age 51, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 26.4
2464 Female, age 72, unknown 29.3
2850 Male, age 76, both hemispheres 27.7
1831 Male, age 72, unknown 25.4
1840 Male, age 53, unknown 23.0
Periaquaductal grey, lateral
nTPM: 27.4
2140 Male, age 76, both hemispheres 28.0
2272 Male, age 74, both hemispheres 27.2
2053 Male, age 18, unknown 27.0
Pretectal area
nTPM: 27.4
2407 Male, age 75, both hemispheres 33.2
2316 Male, age 76, right hemisphere 31.1
2667 Female, age 75, unknown 30.4
1815 Male, age 53, unknown 30.1
2825 Male, age 18, unknown 28.6
1817 Female, age 42, unknown 27.4
2007 Male, age 72, unknown 26.1
2273 Male, age 74, both hemispheres 24.9
2224 Female, age 72, unknown 24.3
1816 Male, age 51, unknown 23.1
1944 Female, age 72, unknown 22.5
Red nucleus
nTPM: 38.5
1904 Male, age 53, unknown 44.8
2769 Male, age 72, unknown 42.2
2227 Male, age 72, unknown 41.1
1865 Male, age 51, unknown 40.5
2588 Male, age 74, left hemisphere 39.8
2785 Male, age 18, unknown 38.6
2584 Male, age 75, left hemisphere 38.4
1821 Female, age 72, unknown 38.2
1954 Female, age 42, unknown 37.4
2503 Female, age 72, unknown 36.4
2823 Male, age 76, right hemisphere 35.9
2725 Female, age 75, unknown 28.4
Substantia nigra
nTPM: 28.9
2583 Male, age 75, right hemisphere 34.6
2590 Female, age 75, unknown 31.3
2699 Male, age 18, unknown 31.1
1851 Male, age 51, unknown 30.1
2409 Female, age 72, unknown 29.3
1889 Female, age 72, unknown 27.9
2665 Male, age 74, both hemispheres 27.0
1916 Female, age 42, unknown 26.5
1941 Male, age 53, unknown 25.9
2241 Male, age 72, unknown 25.4
Superior colliculus
nTPM: 30.7
1995 Male, age 72, unknown 39.1
1913 Female, age 42, unknown 37.0
2664 Male, age 75, both hemispheres 33.4
1839 Male, age 51, unknown 32.3
2587 Male, age 74, left hemisphere 30.0
2668 Female, age 75, unknown 29.1
1895 Male, age 76, right hemisphere 28.7
2261 Male, age 18, unknown 26.7
1796 Male, age 53, unknown 26.2
2087 Female, age 72, unknown 24.9
Ventral tegmental area
nTPM: 30.1
2223 Female, age 72, unknown 34.6
2410 Female, age 72, unknown 33.2
1942 Male, age 51, unknown 29.5
2021 Male, age 53, unknown 29.0
1915 Female, age 42, unknown 27.5
2218 Male, age 76, both hemispheres 26.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 139

Max nTPM: 50.1
Min nTPM: 11.1
Std nTPM: 6.5
Median nTPM: 24.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 50.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 49.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 35.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 35.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 34.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 34.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 33.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 33.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.0
FF:10158-103A5 76 years, female 56.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.3
Pig sample Sample description nTPM
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 42.4
Min nTPM: 24.2
Sample A Female 42.4
Sample B Female 30.5
Sample C Male 24.2
Sample D Male 25.9
Periaqueductal gray
nTPM: 27.2
Samples: 3

Max nTPM: 29.6
Min nTPM: 24.9
Sample B Female 29.6
Sample C Male 24.9
Sample D Male 27.1
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 46.1
Min nTPM: 29.9
Sample A Female 34.4
Sample B Female 29.9
Sample C Male 30.7
Sample D Male 46.1
Superior colliculi
nTPM: 31.5
Samples: 4

Max nTPM: 34.0
Min nTPM: 27.4
Sample A Female 33.3
Sample B Female 31.3
Sample C Male 27.4
Sample D Male 34.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.4
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.3
Sample A Male 15.9
Sample B Male 14.3
Sample C Female 15.1
Sample D Female 16.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
68844474 Antisense, RP_050222_01_F11, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.