BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.1 nTPM
HPA:58.1 nTPM
GTEx:103.8 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:82.2 nTPM
Mouse:85.7 nTPM
Allen mouse:5.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.7
2289 Male, age 61, right hemisphere 53.0
2846 Female, age 79, unknown 51.2
2290 Female, age 72, unknown 49.5
2288 Male, age 75, left hemisphere 49.2
1781 Male, age 74, unknown 35.1
1857 Female, age 85, left hemisphere 29.1
1854 Male, age 80, left hemisphere 25.1
2481 Female, age 94, left hemisphere 17.2
Claustrum
nTPM: 26.2
2284 Female, age 91, both hemispheres 38.9
2568 Male, age 61, both hemispheres 38.9
2292 Female, age 85, both hemispheres 30.8
2491 Male, age 75, both hemispheres 30.4
2645 Female, age 72, unknown 26.1
2198 Male, age 80, both hemispheres 23.5
1956 Male, age 74, unknown 20.6
2196 Female, age 79, unknown 13.7
2392 Female, age 94, both hemispheres 12.6
Globus pallidus, externus
nTPM: 52.1
2567 Female, age 72, unknown 77.7
2772 Female, age 79, unknown 72.7
1996 Male, age 80, right hemisphere 56.9
2395 Male, age 75, both hemispheres 32.7
2646 Male, age 61, right hemisphere 20.4
Globus pallidus, internus
nTPM: 48.4
2111 Female, age 85, right hemisphere 80.6
1818 Male, age 74, unknown 62.1
2566 Female, age 72, unknown 54.4
2287 Male, age 75, right hemisphere 45.7
2037 Male, age 80, right hemisphere 40.5
2778 Female, age 91, both hemispheres 30.9
2483 Female, age 94, right hemisphere 24.7
Nucleus accumbens
nTPM: 25.2
2824 Male, age 61, right hemisphere 42.3
1856 Female, age 91, right hemisphere 38.5
1783 Male, age 74, unknown 37.4
2286 Male, age 75, left hemisphere 27.4
1806 Female, age 85, left hemisphere 22.9
2698 Female, age 72, unknown 16.8
2391 Female, age 94, left hemisphere 13.6
2732 Male, age 80, right hemisphere 2.8
Nucleus basalis of Meynert
nTPM: 34.4
2484 Female, age 94, left hemisphere 45.2
2821 Male, age 75, both hemispheres 32.5
2393 Male, age 80, right hemisphere 30.6
2569 Male, age 61, both hemispheres 29.4
Nucleus of the diagonal band
nTPM: 8.2
2029 Male, age 61, right hemisphere 21.1
1812 Female, age 91, both hemispheres 7.5
2195 Female, age 85, both hemispheres 6.1
2775 Male, age 80, right hemisphere 4.6
1979 Male, age 74, unknown 1.6
Olfactory tubercle
nTPM: 16.0
2856 Male, age 75, right hemisphere 22.8
1998 Female, age 91, both hemispheres 21.5
2487 Female, age 94, left hemisphere 19.6
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 58.1
2489 Female, age 72, unknown 88.3
2647 Male, age 75, left hemisphere 71.2
1829 Male, age 74, unknown 65.8
2466 Female, age 79, unknown 58.3
1937 Female, age 91, right hemisphere 48.6
1838 Male, age 80, right hemisphere 38.9
2482 Female, age 94, left hemisphere 35.4
Septal nuclei
nTPM: 10.2
2394 Male, age 61, left hemisphere 27.3
2059 Female, age 85, both hemispheres 17.0
1960 Male, age 74, unknown 12.2
2629 Female, age 94, right hemisphere 9.0
2031 Female, age 72, unknown 4.4
2009 Female, age 91, both hemispheres 1.5
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 103.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 90.8
Samples: 246

Max nTPM: 201.7
Min nTPM: 14.8
Std nTPM: 38.6
Median nTPM: 94.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 201.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 199.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 179.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 177.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 170.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 170.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 169.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 163.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 163.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 158.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 154.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 78.0
Samples: 246

Max nTPM: 182.0
Min nTPM: 4.8
Std nTPM: 31.5
Median nTPM: 78.5
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 182.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 178.3
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 162.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 147.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 147.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 145.4
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 142.8
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 139.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 134.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 132.1
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 131.3
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Brain - Putamen (basal ganglia)
Average nTPM: 103.8
Samples: 205

Max nTPM: 194.6
Min nTPM: 16.4
Std nTPM: 39.5
Median nTPM: 103.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 194.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 189.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 182.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 178.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 175.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 175.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 172.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 170.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 170.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 169.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 168.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.9
FF:10164-103B2 76 years, female 37.9
Globus pallidus
Scaled Tags Per Million: 19.1
FF:10161-103A8 76 years, female 20.0
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 19.3
FF:10037-101F1 23-56 years, mixed 19.3
Putamen
Scaled Tags Per Million: 42.1
FF:10176-103C5 60 years, female 42.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 82.2
Pig sample Sample description nTPM
Caudate
nTPM: 59.4
Samples: 4

Max nTPM: 89.1
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 54.6
Sample C Male 89.1
Sample D Male 61.2
Putamen
nTPM: 82.2
Samples: 4

Max nTPM: 113.6
Min nTPM: 61.7
Sample A Female 61.7
Sample B Female 67.2
Sample C Male 113.6
Sample D Male 86.4
Septum
nTPM: 29.4
Samples: 4

Max nTPM: 38.9
Min nTPM: 23.5
Sample A Female 27.8
Sample B Female 27.5
Sample C Male 38.9
Sample D Male 23.5
Ventral pallidum
nTPM: 48.7
Samples: 4

Max nTPM: 91.4
Min nTPM: 28.9
Sample A Female 28.9
Sample B Female 39.9
Sample C Male 91.4
Sample D Male 34.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 85.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 85.7
Samples: 4

Max nTPM: 97.3
Min nTPM: 75.4
Sample A Male 91.5
Sample B Male 97.3
Sample C Female 75.4
Sample D Female 78.5
Septum
nTPM: 64.7
Samples: 4

Max nTPM: 70.1
Min nTPM: 59.6
Sample A Male 59.6
Sample B Male 70.1
Sample C Female 63.7
Sample D Female 65.2
Ventral forebrain
nTPM: 72.4
Samples: 4

Max nTPM: 77.1
Min nTPM: 67.9
Sample A Male 70.0
Sample B Male 74.6
Sample C Female 77.1
Sample D Female 67.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
70723465 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 2.1
73512185 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 5.2
73512185 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 5.2
70723465 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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