MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:76.7 nTPM
HPA:76.7 nTPM
GTEx:76.8 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:89.4 nTPM
Mouse:104.2 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.0
2019 Male, age 18, unknown 152.4
2586 Male, age 75, left hemisphere 57.8
2666 Male, age 74, left hemisphere 55.1
2411 Female, age 72, unknown 48.4
2828 Female, age 72, unknown 46.0
1833 Male, age 53, unknown 41.4
1830 Male, age 51, unknown 38.8
1870 Female, age 42, unknown 33.8
2219 Male, age 76, both hemispheres 33.6
1827 Male, age 72, unknown 22.6
Dorsal raphe nucleus
nTPM: 23.4
2750 Male, age 76, both hemispheres 50.1
1828 Male, age 53, unknown 32.7
2047 Male, age 72, unknown 15.4
2016 Female, age 72, unknown 13.6
2298 Female, age 72, unknown 5.1
Inferior colliculus
nTPM: 31.5
1890 Male, age 53, unknown 45.4
2097 Female, age 72, unknown 38.2
1848 Female, age 42, unknown 25.4
2849 Male, age 72, unknown 16.9
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Pedunculopontine tegmental nucleus
nTPM: 37.2
2334 Male, age 80, both hemispheres 48.9
1921 Female, age 85, both hemispheres 39.5
2338 Male, age 61, both hemispheres 23.3
Periaquaductal grey, anterior
nTPM: 24.9
2502 Female, age 75, unknown 30.4
1795 Male, age 51, unknown 23.5
1947 Male, age 18, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 9.3
2464 Female, age 72, unknown 28.4
1831 Male, age 72, unknown 9.0
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 7.1
2272 Male, age 74, both hemispheres 20.3
2053 Male, age 18, unknown 0.9
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 53.6
2007 Male, age 72, unknown 142.6
1817 Female, age 42, unknown 122.3
1944 Female, age 72, unknown 90.6
1815 Male, age 53, unknown 72.5
1816 Male, age 51, unknown 71.1
2667 Female, age 75, unknown 43.2
2316 Male, age 76, right hemisphere 18.5
2407 Male, age 75, both hemispheres 14.6
2273 Male, age 74, both hemispheres 10.8
2825 Male, age 18, unknown 2.8
2224 Female, age 72, unknown 0.4
Red nucleus
nTPM: 76.7
2785 Male, age 18, unknown 165.2
2588 Male, age 74, left hemisphere 103.0
2769 Male, age 72, unknown 81.8
2227 Male, age 72, unknown 78.4
2823 Male, age 76, right hemisphere 74.4
1904 Male, age 53, unknown 72.7
2503 Female, age 72, unknown 72.0
2584 Male, age 75, left hemisphere 64.1
1865 Male, age 51, unknown 61.4
1821 Female, age 72, unknown 59.9
1954 Female, age 42, unknown 56.5
2725 Female, age 75, unknown 30.8
Substantia nigra
nTPM: 36.8
1889 Female, age 72, unknown 83.9
2583 Male, age 75, right hemisphere 48.4
1916 Female, age 42, unknown 42.8
2590 Female, age 75, unknown 38.4
1851 Male, age 51, unknown 36.8
1941 Male, age 53, unknown 36.7
2665 Male, age 74, both hemispheres 34.6
2409 Female, age 72, unknown 25.8
2241 Male, age 72, unknown 13.2
2699 Male, age 18, unknown 7.5
Superior colliculus
nTPM: 37.0
2087 Female, age 72, unknown 62.1
2668 Female, age 75, unknown 62.0
2587 Male, age 74, left hemisphere 43.9
1895 Male, age 76, right hemisphere 35.8
1913 Female, age 42, unknown 35.4
1995 Male, age 72, unknown 34.1
2261 Male, age 18, unknown 29.6
1839 Male, age 51, unknown 28.7
1796 Male, age 53, unknown 25.8
2664 Male, age 75, both hemispheres 12.4
Ventral tegmental area
nTPM: 31.0
2410 Female, age 72, unknown 50.9
2223 Female, age 72, unknown 43.4
2218 Male, age 76, both hemispheres 30.5
1942 Male, age 51, unknown 28.9
1915 Female, age 42, unknown 22.7
2021 Male, age 53, unknown 9.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.8
Samples: 139

Max nTPM: 166.8
Min nTPM: 12.6
Std nTPM: 33.1
Median nTPM: 75.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 166.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 163.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 162.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 160.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 154.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 154.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 144.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 141.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 127.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 125.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 123.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.4
Pig sample Sample description nTPM
Midbrain
nTPM: 77.7
Samples: 4

Max nTPM: 101.5
Min nTPM: 50.1
Sample A Female 78.5
Sample B Female 50.1
Sample C Male 101.5
Sample D Male 80.7
Periaqueductal gray
nTPM: 43.2
Samples: 3

Max nTPM: 52.9
Min nTPM: 31.6
Sample B Female 52.9
Sample C Male 45.2
Sample D Male 31.6
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 75.4
Min nTPM: 29.3
Sample A Female 75.4
Sample B Female 29.3
Sample C Male 54.8
Sample D Male 58.1
Superior colliculi
nTPM: 89.4
Samples: 4

Max nTPM: 115.2
Min nTPM: 41.9
Sample A Female 115.2
Sample B Female 41.9
Sample C Male 111.1
Sample D Male 89.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.2
Samples: 4

Max nTPM: 107.3
Min nTPM: 99.5
Sample A Male 103.1
Sample B Male 99.5
Sample C Female 106.9
Sample D Female 107.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
73512185 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 7.6
70723465 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.