BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.9 nTPM
HPA:74.9 nTPM
GTEx:66.9 nTPM
FANTOM5:152.0 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:88.2 nTPM
Allen mouse:3.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 74.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 65.8
1857 Female, age 85, left hemisphere 77.9
2481 Female, age 94, left hemisphere 77.4
2290 Female, age 72, unknown 70.3
1854 Male, age 80, left hemisphere 65.5
2288 Male, age 75, left hemisphere 65.5
2289 Male, age 61, right hemisphere 64.9
2846 Female, age 79, unknown 53.5
1781 Male, age 74, unknown 51.2
Claustrum
nTPM: 45.8
2196 Female, age 79, unknown 51.6
2568 Male, age 61, both hemispheres 48.4
2645 Female, age 72, unknown 47.8
2491 Male, age 75, both hemispheres 47.0
2198 Male, age 80, both hemispheres 46.2
2284 Female, age 91, both hemispheres 45.4
2392 Female, age 94, both hemispheres 45.2
2292 Female, age 85, both hemispheres 42.3
1956 Male, age 74, unknown 38.9
Globus pallidus, externus
nTPM: 74.9
2646 Male, age 61, right hemisphere 91.1
1996 Male, age 80, right hemisphere 89.7
2772 Female, age 79, unknown 70.8
2567 Female, age 72, unknown 65.4
2395 Male, age 75, both hemispheres 57.6
Globus pallidus, internus
nTPM: 71.9
2037 Male, age 80, right hemisphere 85.3
1818 Male, age 74, unknown 83.9
2483 Female, age 94, right hemisphere 81.4
2287 Male, age 75, right hemisphere 71.8
2778 Female, age 91, both hemispheres 63.4
2566 Female, age 72, unknown 59.8
2111 Female, age 85, right hemisphere 57.9
Nucleus accumbens
nTPM: 60.2
1806 Female, age 85, left hemisphere 73.8
2286 Male, age 75, left hemisphere 70.3
2732 Male, age 80, right hemisphere 58.7
2698 Female, age 72, unknown 58.1
2824 Male, age 61, right hemisphere 57.3
1856 Female, age 91, right hemisphere 57.0
2391 Female, age 94, left hemisphere 56.0
1783 Male, age 74, unknown 50.2
Nucleus basalis of Meynert
nTPM: 74.7
2569 Male, age 61, both hemispheres 105.8
2821 Male, age 75, both hemispheres 70.9
2484 Female, age 94, left hemisphere 64.7
2393 Male, age 80, right hemisphere 57.4
Nucleus of the diagonal band
nTPM: 54.1
1979 Male, age 74, unknown 66.1
2195 Female, age 85, both hemispheres 54.4
1812 Female, age 91, both hemispheres 53.4
2775 Male, age 80, right hemisphere 48.7
2029 Male, age 61, right hemisphere 47.7
Olfactory tubercle
nTPM: 49.4
1846 Male, age 80, right hemisphere 54.1
2856 Male, age 75, right hemisphere 54.1
1998 Female, age 91, both hemispheres 44.9
2487 Female, age 94, left hemisphere 44.6
Putamen
nTPM: 57.2
2482 Female, age 94, left hemisphere 65.0
2489 Female, age 72, unknown 60.7
1838 Male, age 80, right hemisphere 60.0
2647 Male, age 75, left hemisphere 57.9
1937 Female, age 91, right hemisphere 54.2
1829 Male, age 74, unknown 52.7
2466 Female, age 79, unknown 49.9
Septal nuclei
nTPM: 56.1
2199 Male, age 80, right hemisphere 67.2
2394 Male, age 61, left hemisphere 64.3
2059 Female, age 85, both hemispheres 63.8
2009 Female, age 91, both hemispheres 51.5
2031 Female, age 72, unknown 51.0
1960 Male, age 74, unknown 48.6
2629 Female, age 94, right hemisphere 46.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.9
Samples: 246

Max nTPM: 171.2
Min nTPM: 21.7
Std nTPM: 22.5
Median nTPM: 63.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 171.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 149.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 141.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 138.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 134.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 131.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 130.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 115.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 112.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 107.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 107.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.0
Samples: 246

Max nTPM: 156.0
Min nTPM: 23.0
Std nTPM: 25.2
Median nTPM: 58.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 156.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 148.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 141.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 139.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 137.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 135.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 134.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 132.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 130.3
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 125.6
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 118.9
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Brain - Putamen (basal ganglia)
Average nTPM: 62.1
Samples: 205

Max nTPM: 125.3
Min nTPM: 18.5
Std nTPM: 21.5
Median nTPM: 60.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 125.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 121.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 116.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 115.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 112.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 111.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 108.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 104.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 104.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 104.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 102.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 128.2
FF:10164-103B2 76 years, female 128.2
Globus pallidus
Scaled Tags Per Million: 124.9
FF:10161-103A8 76 years, female 125.2
FF:10175-103C4 60 years, female 124.7
Nucleus accumbens
Scaled Tags Per Million: 152.0
FF:10037-101F1 23-56 years, mixed 152.0
Putamen
Scaled Tags Per Million: 147.4
FF:10176-103C5 60 years, female 147.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 68.6
Pig sample Sample description nTPM
Caudate
nTPM: 51.3
Samples: 4

Max nTPM: 61.2
Min nTPM: 46.4
Sample A Female 49.5
Sample B Female 46.4
Sample C Male 61.2
Sample D Male 47.9
Putamen
nTPM: 56.5
Samples: 4

Max nTPM: 66.9
Min nTPM: 41.1
Sample A Female 66.9
Sample B Female 41.1
Sample C Male 63.1
Sample D Male 54.9
Septum
nTPM: 68.6
Samples: 4

Max nTPM: 98.0
Min nTPM: 47.8
Sample A Female 61.6
Sample B Female 47.8
Sample C Male 98.0
Sample D Male 66.9
Ventral pallidum
nTPM: 58.2
Samples: 4

Max nTPM: 82.9
Min nTPM: 44.9
Sample A Female 44.9
Sample B Female 54.1
Sample C Male 82.9
Sample D Male 50.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 88.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 85.0
Samples: 4

Max nTPM: 88.2
Min nTPM: 78.2
Sample A Male 85.9
Sample B Male 78.2
Sample C Female 87.7
Sample D Female 88.2
Septum
nTPM: 84.2
Samples: 4

Max nTPM: 93.1
Min nTPM: 77.4
Sample A Male 85.0
Sample B Male 77.4
Sample C Female 93.1
Sample D Female 81.2
Ventral forebrain
nTPM: 88.3
Samples: 4

Max nTPM: 106.1
Min nTPM: 76.9
Sample A Male 76.9
Sample B Male 89.5
Sample C Female 106.1
Sample D Female 80.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
73769324 Antisense, RP_051121_04_B09, Mouse strain C57BL/6J (56 days, male) 3.8
69549650 Antisense, RP_050315_01_B12, Mouse strain C57BL/6J (56 days, male) 2.6
Pallidum
Expression energy: 3.3
73769324 Antisense, RP_051121_04_B09, Mouse strain C57BL/6J (56 days, male) 3.6
69549650 Antisense, RP_050315_01_B12, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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