MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.7 nTPM
HPA:86.7 nTPM
GTEx:84.2 nTPM
FANTOM5:140.3 Scaled Tags Per Million
Pig:142.4 nTPM
Mouse:88.8 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.8
2586 Male, age 75, left hemisphere 90.9
2828 Female, age 72, unknown 86.8
2666 Male, age 74, left hemisphere 79.6
1870 Female, age 42, unknown 78.5
1827 Male, age 72, unknown 76.7
1833 Male, age 53, unknown 70.9
2411 Female, age 72, unknown 67.9
2219 Male, age 76, both hemispheres 66.3
1830 Male, age 51, unknown 63.6
2019 Male, age 18, unknown 56.4
Dorsal raphe nucleus
nTPM: 86.7
2047 Male, age 72, unknown 104.3
1828 Male, age 53, unknown 93.8
2016 Female, age 72, unknown 85.7
2298 Female, age 72, unknown 76.7
2750 Male, age 76, both hemispheres 73.1
Inferior colliculus
nTPM: 85.5
1848 Female, age 42, unknown 91.8
2849 Male, age 72, unknown 89.1
1890 Male, age 53, unknown 82.5
2097 Female, age 72, unknown 78.6
Median raphe nucleus
nTPM: 80.1
2220 Male, age 76, midline 80.1
Pedunculopontine tegmental nucleus
nTPM: 67.4
1921 Female, age 85, both hemispheres 74.7
2334 Male, age 80, both hemispheres 67.1
2338 Male, age 61, both hemispheres 60.5
Periaquaductal grey, anterior
nTPM: 85.4
1947 Male, age 18, unknown 86.1
2502 Female, age 75, unknown 85.4
1795 Male, age 51, unknown 84.8
Periaquaductal grey, dorsal
nTPM: 86.0
1840 Male, age 53, unknown 97.8
2850 Male, age 76, both hemispheres 88.6
2464 Female, age 72, unknown 83.4
1831 Male, age 72, unknown 74.0
Periaquaductal grey, lateral
nTPM: 80.0
2140 Male, age 76, both hemispheres 93.8
2053 Male, age 18, unknown 89.7
2272 Male, age 74, both hemispheres 56.6
Pretectal area
nTPM: 75.5
1816 Male, age 51, unknown 86.8
1944 Female, age 72, unknown 85.4
2667 Female, age 75, unknown 85.3
1817 Female, age 42, unknown 85.1
2825 Male, age 18, unknown 83.6
2224 Female, age 72, unknown 81.3
2316 Male, age 76, right hemisphere 76.3
1815 Male, age 53, unknown 71.4
2007 Male, age 72, unknown 64.4
2407 Male, age 75, both hemispheres 55.9
2273 Male, age 74, both hemispheres 55.0
Red nucleus
nTPM: 78.9
2823 Male, age 76, right hemisphere 98.3
1954 Female, age 42, unknown 93.2
2769 Male, age 72, unknown 84.0
2227 Male, age 72, unknown 83.6
2503 Female, age 72, unknown 83.3
1821 Female, age 72, unknown 83.2
2588 Male, age 74, left hemisphere 82.8
1904 Male, age 53, unknown 78.7
2725 Female, age 75, unknown 76.4
1865 Male, age 51, unknown 68.9
2584 Male, age 75, left hemisphere 59.9
2785 Male, age 18, unknown 54.1
Substantia nigra
nTPM: 83.2
2699 Male, age 18, unknown 116.0
2665 Male, age 74, both hemispheres 92.8
1916 Female, age 42, unknown 90.0
1851 Male, age 51, unknown 82.8
2409 Female, age 72, unknown 82.2
2241 Male, age 72, unknown 81.3
1889 Female, age 72, unknown 77.7
2590 Female, age 75, unknown 74.1
2583 Male, age 75, right hemisphere 67.7
1941 Male, age 53, unknown 67.3
Superior colliculus
nTPM: 73.7
2087 Female, age 72, unknown 84.1
1839 Male, age 51, unknown 79.8
2261 Male, age 18, unknown 78.9
1895 Male, age 76, right hemisphere 78.1
1796 Male, age 53, unknown 78.0
2664 Male, age 75, both hemispheres 72.2
2668 Female, age 75, unknown 71.1
2587 Male, age 74, left hemisphere 70.4
1995 Male, age 72, unknown 64.0
1913 Female, age 42, unknown 60.2
Ventral tegmental area
nTPM: 75.4
1915 Female, age 42, unknown 83.7
2410 Female, age 72, unknown 80.2
2218 Male, age 76, both hemispheres 79.9
1942 Male, age 51, unknown 75.5
2021 Male, age 53, unknown 74.7
2223 Female, age 72, unknown 58.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.2
Samples: 139

Max nTPM: 278.3
Min nTPM: 17.3
Std nTPM: 39.0
Median nTPM: 76.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 278.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 183.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 181.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 178.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 174.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 172.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 158.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 157.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 154.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 148.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 147.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.3
FF:10158-103A5 76 years, female 140.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 142.4
Pig sample Sample description nTPM
Midbrain
nTPM: 100.6
Samples: 4

Max nTPM: 132.2
Min nTPM: 75.1
Sample A Female 132.2
Sample B Female 92.1
Sample C Male 102.9
Sample D Male 75.1
Periaqueductal gray
nTPM: 79.1
Samples: 3

Max nTPM: 88.1
Min nTPM: 69.3
Sample B Female 79.9
Sample C Male 88.1
Sample D Male 69.3
Substantia nigra
nTPM: 134.0
Samples: 4

Max nTPM: 199.1
Min nTPM: 107.0
Sample A Female 117.0
Sample B Female 199.1
Sample C Male 107.0
Sample D Male 113.0
Superior colliculi
nTPM: 142.4
Samples: 4

Max nTPM: 229.4
Min nTPM: 93.4
Sample A Female 145.9
Sample B Female 229.4
Sample C Male 93.4
Sample D Male 100.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 92.7
Min nTPM: 84.0
Sample A Male 91.5
Sample B Male 87.0
Sample C Female 92.7
Sample D Female 84.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
73769324 Antisense, RP_051121_04_B09, Mouse strain C57BL/6J (56 days, male) 4.5
69549650 Antisense, RP_050315_01_B12, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.