HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.3 nTPM
HPA:64.3 nTPM
GTEx:44.9 nTPM
FANTOM5:141.6 Scaled Tags Per Million
Pig:72.6 nTPM
Mouse:65.1 nTPM
Allen mouse:3.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.3
Sample id Sample description nTPM
Hippocampus
nTPM: 56.7
2529 Female, age 94, left hemisphere 61.0
1911 Female, age 85, right hemisphere 57.9
1855 Male, age 76, left hemisphere 56.6
2148 Female, age 91, left hemisphere 56.5
2621 Female, age 67, right hemisphere 54.6
1898 Male, age 80, left hemisphere 53.6
Dentate gyrus
nTPM: 53.5
2528 Male, age 74, both hemispheres 57.5
2246 Female, age 85, both hemispheres 55.9
2531 Female, age 67, both hemispheres 54.7
2530 Female, age 94, left hemisphere 52.3
2010 Male, age 76, both hemispheres 51.0
1927 Female, age 91, both hemispheres 49.6
Entorhinal gyrus
nTPM: 52.3
2686 Male, age 75, right hemisphere 58.2
2117 Female, age 91, right hemisphere 57.1
1938 Female, age 85, left hemisphere 54.4
1787 Male, age 76, left hemisphere 51.6
2764 Male, age 80, right hemisphere 46.4
2613 Female, age 94, left hemisphere 46.2
Hippocampus, CA1
nTPM: 54.3
2527 Male, age 74, both hemispheres 61.9
1873 Female, age 85, both hemispheres 55.1
2045 Male, age 76, both hemispheres 55.0
2082 Female, age 91, right hemisphere 53.8
2749 Male, age 80, left hemisphere 45.6
Hippocampus, CA2
nTPM: 54.8
2249 Male, age 74, both hemispheres 65.4
1940 Female, age 85, left hemisphere 58.1
2113 Female, age 91, right hemisphere 55.4
2437 Female, age 94, left hemisphere 54.1
1963 Male, age 80, left hemisphere 51.1
1892 Male, age 76, both hemispheres 44.6
Hippocampus, CA3
nTPM: 64.3
2436 Male, age 74, both hemispheres 110.7
2861 Female, age 67, both hemispheres 63.8
1891 Female, age 85, both hemispheres 56.5
2620 Female, age 94, left hemisphere 51.9
2137 Male, age 80, left hemisphere 51.6
1867 Male, age 76, both hemispheres 51.3
Parahippocampal cortex
nTPM: 53.7
2692 Male, age 74, both hemispheres 60.4
2622 Female, age 67, right hemisphere 57.5
2250 Female, age 67, right hemisphere 55.9
1933 Female, age 85, both hemispheres 55.8
2693 Female, age 94, both hemispheres 53.4
2018 Male, age 76, both hemispheres 53.1
2245 Female, age 91, both hemispheres 53.0
1990 Female, age 91, right hemisphere 52.9
1850 Male, age 80, both hemispheres 49.7
2532 Female, age 72, left hemisphere 45.0
Perirhinal gyrus
nTPM: 50.1
1841 Female, age 85, right hemisphere 55.0
2521 Female, age 94, right hemisphere 51.1
1847 Female, age 91, left hemisphere 49.1
1794 Male, age 80, right hemisphere 48.9
2848 Male, age 76, right hemisphere 46.4
Subiculum
nTPM: 55.1
2619 Male, age 74, both hemispheres 64.6
2729 Female, age 91, right hemisphere 59.4
2438 Female, age 94, left hemisphere 54.0
2042 Male, age 76, both hemispheres 52.6
1977 Female, age 85, both hemispheres 51.3
1901 Male, age 80, both hemispheres 48.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 44.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.9
Samples: 197

Max nTPM: 222.7
Min nTPM: 18.1
Std nTPM: 21.0
Median nTPM: 41.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 222.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 125.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 99.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 88.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 87.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 86.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 86.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 84.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 82.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 79.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 78.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 141.6
FF:10153-102I9 76 years, female 171.3
FF:10169-103B7 60 years, female 111.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 72.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 45.1
Samples: 4

Max nTPM: 57.0
Min nTPM: 36.9
Sample A Female 49.0
Sample B Female 36.9
Sample C Male 57.0
Sample D Male 37.3
Entorhinal cortex
nTPM: 61.8
Samples: 4

Max nTPM: 76.2
Min nTPM: 45.2
Sample A Female 76.2
Sample B Female 55.7
Sample C Male 69.9
Sample D Male 45.2
Subiculum
nTPM: 72.6
Samples: 4

Max nTPM: 82.5
Min nTPM: 53.2
Sample A Female 82.5
Sample B Female 53.2
Sample C Male 78.8
Sample D Male 76.0
Ventral hippocampus
nTPM: 58.3
Samples: 4

Max nTPM: 90.9
Min nTPM: 45.6
Sample A Female 49.9
Sample B Female 46.8
Sample C Male 90.9
Sample D Male 45.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.1
Samples: 4

Max nTPM: 71.5
Min nTPM: 55.7
Sample A Male 64.8
Sample B Male 55.7
Sample C Female 68.5
Sample D Female 71.5
Hippocampal formation
nTPM: 54.9
Samples: 4

Max nTPM: 67.7
Min nTPM: 48.9
Sample A Male 50.0
Sample B Male 48.9
Sample C Female 53.1
Sample D Female 67.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.7
73769324 Antisense, RP_051121_04_B09, Mouse strain C57BL/6J (56 days, male) 3.7
69549650 Antisense, RP_050315_01_B12, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.