MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:148.8 nTPM
HPA:148.8 nTPM
GTEx:152.9 nTPM
FANTOM5:300.4 Scaled Tags Per Million
Pig:50.7 nTPM
Mouse:36.6 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109.7
1830 Male, age 51, unknown 138.7
2019 Male, age 18, unknown 134.6
2411 Female, age 72, unknown 130.7
1870 Female, age 42, unknown 125.6
1833 Male, age 53, unknown 124.6
2828 Female, age 72, unknown 100.8
2666 Male, age 74, left hemisphere 94.0
2586 Male, age 75, left hemisphere 90.1
2219 Male, age 76, both hemispheres 79.8
1827 Male, age 72, unknown 78.2
Dorsal raphe nucleus
nTPM: 91.0
2750 Male, age 76, both hemispheres 149.9
1828 Male, age 53, unknown 90.2
2016 Female, age 72, unknown 81.0
2047 Male, age 72, unknown 75.4
2298 Female, age 72, unknown 58.4
Inferior colliculus
nTPM: 81.5
1890 Male, age 53, unknown 89.3
1848 Female, age 42, unknown 88.6
2849 Male, age 72, unknown 74.6
2097 Female, age 72, unknown 73.5
Median raphe nucleus
nTPM: 95.2
2220 Male, age 76, midline 95.2
Pedunculopontine tegmental nucleus
nTPM: 114.1
2338 Male, age 61, both hemispheres 138.5
2334 Male, age 80, both hemispheres 112.7
1921 Female, age 85, both hemispheres 91.0
Periaquaductal grey, anterior
nTPM: 71.8
2502 Female, age 75, unknown 83.2
1947 Male, age 18, unknown 72.1
1795 Male, age 51, unknown 60.2
Periaquaductal grey, dorsal
nTPM: 64.7
2464 Female, age 72, unknown 84.0
1831 Male, age 72, unknown 65.6
2850 Male, age 76, both hemispheres 56.6
1840 Male, age 53, unknown 52.7
Periaquaductal grey, lateral
nTPM: 65.9
2053 Male, age 18, unknown 73.6
2272 Male, age 74, both hemispheres 66.4
2140 Male, age 76, both hemispheres 57.7
Pretectal area
nTPM: 73.2
1815 Male, age 53, unknown 93.4
1817 Female, age 42, unknown 86.2
2316 Male, age 76, right hemisphere 83.6
2007 Male, age 72, unknown 81.5
2407 Male, age 75, both hemispheres 79.6
2825 Male, age 18, unknown 75.6
2273 Male, age 74, both hemispheres 64.7
2667 Female, age 75, unknown 63.7
1944 Female, age 72, unknown 60.5
2224 Female, age 72, unknown 59.9
1816 Male, age 51, unknown 56.0
Red nucleus
nTPM: 148.8
1865 Male, age 51, unknown 184.5
1821 Female, age 72, unknown 172.0
1904 Male, age 53, unknown 168.4
2823 Male, age 76, right hemisphere 166.5
2769 Male, age 72, unknown 163.0
2227 Male, age 72, unknown 161.5
2503 Female, age 72, unknown 148.7
1954 Female, age 42, unknown 146.9
2785 Male, age 18, unknown 139.0
2588 Male, age 74, left hemisphere 135.2
2584 Male, age 75, left hemisphere 100.5
2725 Female, age 75, unknown 99.9
Substantia nigra
nTPM: 91.8
2590 Female, age 75, unknown 105.0
2409 Female, age 72, unknown 102.4
1851 Male, age 51, unknown 100.2
2583 Male, age 75, right hemisphere 99.6
1889 Female, age 72, unknown 99.4
2699 Male, age 18, unknown 87.4
2665 Male, age 74, both hemispheres 85.7
2241 Male, age 72, unknown 84.8
1941 Male, age 53, unknown 78.7
1916 Female, age 42, unknown 74.9
Superior colliculus
nTPM: 87.6
1913 Female, age 42, unknown 108.7
1995 Male, age 72, unknown 106.3
2668 Female, age 75, unknown 100.5
2587 Male, age 74, left hemisphere 98.3
1839 Male, age 51, unknown 96.2
1895 Male, age 76, right hemisphere 90.7
2664 Male, age 75, both hemispheres 75.8
1796 Male, age 53, unknown 72.3
2087 Female, age 72, unknown 65.1
2261 Male, age 18, unknown 62.2
Ventral tegmental area
nTPM: 109.0
2223 Female, age 72, unknown 179.7
2410 Female, age 72, unknown 116.5
2218 Male, age 76, both hemispheres 98.6
2021 Male, age 53, unknown 88.9
1942 Male, age 51, unknown 88.4
1915 Female, age 42, unknown 81.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 152.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.9
Samples: 139

Max nTPM: 348.1
Min nTPM: 19.1
Std nTPM: 74.8
Median nTPM: 140.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 348.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 342.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 341.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 333.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 324.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 319.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 309.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 302.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 297.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 283.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 277.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 300.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 300.4
FF:10158-103A5 76 years, female 300.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.7
Pig sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 86.1
Min nTPM: 28.0
Sample A Female 86.1
Sample B Female 28.0
Sample C Male 28.5
Sample D Male 28.1
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 28.5
Min nTPM: 23.9
Sample B Female 28.5
Sample C Male 28.2
Sample D Male 23.9
Substantia nigra
nTPM: 38.3
Samples: 4

Max nTPM: 50.5
Min nTPM: 30.5
Sample A Female 50.5
Sample B Female 30.5
Sample C Male 33.8
Sample D Male 38.2
Superior colliculi
nTPM: 50.8
Samples: 4

Max nTPM: 80.8
Min nTPM: 29.6
Sample A Female 61.4
Sample B Female 80.8
Sample C Male 29.6
Sample D Male 31.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 39.1
Min nTPM: 34.3
Sample A Male 39.1
Sample B Male 36.8
Sample C Female 34.3
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68744432 Antisense, RP_050203_02_H07, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.