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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:135.8 nTPM
HPA:135.8 nTPM
GTEx:293.0 nTPM
FANTOM5:373.0 Scaled Tags Per Million
Pig:67.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 135.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 106.0
1981 Female, age 72, midline 119.5
2048 Male, age 55, midline 116.9
2816 Male, age 47, midline 108.1
2194 Female, age 79, both hemispheres 98.4
2565 Male, age 75, midline 87.3
Cervical spinal cord, dorsal horn
nTPM: 113.3
2296 Male, age 66, both hemispheres 165.0
2173 Female, age 72, unknown 157.7
2069 Male, age 47, both hemispheres 109.8
1877 Male, age 55, unknown 105.2
2721 Male, age 90, both hemispheres 77.4
2297 Male, age 75, both hemispheres 64.7
Cervical spinal cord, ventral horn
nTPM: 135.8
2480 Male, age 75, both hemispheres 155.3
2098 Female, age 72, unknown 142.4
2068 Male, age 55, unknown 136.2
2295 Male, age 66, both hemispheres 133.0
2809 Male, age 90, both hemispheres 132.2
2820 Female, age 79, both hemispheres 115.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 293.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 293.0
Samples: 159

Max nTPM: 621.2
Min nTPM: 71.3
Std nTPM: 114.8
Median nTPM: 289.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 621.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 619.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 610.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 591.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 546.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 534.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 501.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 501.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 476.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 469.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 465.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 459.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 448.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 440.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 437.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 435.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 429.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 428.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 424.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 417.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 417.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 415.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 415.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 404.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 401.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 400.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 398.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 397.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 395.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 392.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 389.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 387.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 381.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 378.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 376.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 371.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 371.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 370.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 367.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 365.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 365.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 363.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 359.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 355.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 353.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 352.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 351.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 349.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 348.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 344.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 344.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 343.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 342.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 337.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 336.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 336.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 336.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 333.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 333.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 332.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 330.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 327.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 325.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 324.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 322.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 320.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 319.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 318.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 317.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 317.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 315.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 314.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 310.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 303.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 302.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 300.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 298.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 296.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 289.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 289.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 286.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 284.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 278.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 278.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 277.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 276.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 273.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 270.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 270.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 265.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 264.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 263.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 259.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 259.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 257.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 255.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 249.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 246.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 243.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 241.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 238.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 234.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 232.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 232.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 232.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 231.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 227.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 227.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 226.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 224.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 224.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 220.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 219.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 217.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 215.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 214.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 213.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 209.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 208.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 207.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 206.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 205.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 203.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 198.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 197.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 196.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 196.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 195.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 195.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 193.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 192.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 192.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 191.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 180.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 180.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 177.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 173.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 172.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 171.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 168.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 167.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 166.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 150.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 141.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 134.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 125.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 123.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 121.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 112.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 104.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 103.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 100.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 95.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 94.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 91.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 75.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 71.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 373.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 373.0
FF:10181-103D1 60 years, female 484.1
FF:10159-103A6 76 years, female 262.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 52.8
Samples: 4

Max nTPM: 64.4
Min nTPM: 38.8
Sample A Female 64.4
Sample B Female 38.8
Sample C Male 60.4
Sample D Male 47.5
Ventral spinal cord
nTPM: 67.5
Samples: 4

Max nTPM: 90.4
Min nTPM: 52.7
Sample A Female 90.4
Sample B Female 52.7
Sample C Male 65.5
Sample D Male 61.2

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