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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:2850.8 nTPM
GTEx:4541.6 nTPM
FANTOM5:2284.2 Scaled Tags Per Million
Pig:1059.7 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 2850.8
Sample id Sample description nTPM
Putamen
nTPM: 2850.8
2489 Female, age 72, unknown 3155.7
2482 Female, age 94, left hemisphere 3114.7
2647 Male, age 75, left hemisphere 3036.2
2466 Female, age 79, unknown 2833.0
1829 Male, age 74, unknown 2646.9
1937 Female, age 91, right hemisphere 2590.4
1838 Male, age 80, right hemisphere 2578.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4541.6
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 4541.6
Samples: 205

Max nTPM: 15342.6
Min nTPM: 880.6
Std nTPM: 2615.2
Median nTPM: 3949.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 15342.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 14592.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 13491.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 11806.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 11802.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 11651.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 11642.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 11095.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 10584.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 10028.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 10009.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 9623.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 9403.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 9015.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 8872.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 8396.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 8263.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 8229.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 8188.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 8138.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 7835.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 7747.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 7693.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 7579.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 7400.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 7378.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 7283.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 7136.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 7115.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 6827.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 6825.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 6756.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 6745.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 6715.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 6695.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 6502.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 6473.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 6409.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 6385.8
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 6347.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 6182.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 6135.4
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 6119.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 6109.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 5942.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 5921.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 5910.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 5874.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 5809.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 5793.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 5751.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 5706.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 5692.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 5663.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 5609.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 5551.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 5515.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 5416.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 5372.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 5296.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 5278.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 5249.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 5238.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 5218.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 5193.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 5160.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 5151.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 5144.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 5019.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 4983.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 4929.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 4919.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 4895.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 4868.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 4858.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 4766.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 4710.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 4695.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 4675.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 4669.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 4650.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 4639.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 4624.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 4624.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 4610.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 4553.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 4458.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 4430.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4428.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 4402.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 4335.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 4301.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 4291.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 4255.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 4228.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 4202.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 4164.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 4125.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 4001.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 4000.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 3962.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 3960.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 3949.1
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 3773.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 3759.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 3753.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 3743.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 3737.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 3713.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 3702.5
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 3681.2
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 3660.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 3632.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 3632.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 3604.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 3600.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 3593.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 3561.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 3555.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 3516.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 3490.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 3471.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 3469.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 3462.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 3383.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 3378.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 3361.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 3336.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 3276.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 3275.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 3242.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 3221.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 3218.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 3205.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 3158.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 3157.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 3105.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3099.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 3079.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 3026.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2963.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 2952.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 2901.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 2885.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 2885.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 2843.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 2831.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 2826.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 2819.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 2819.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 2761.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 2760.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 2685.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 2651.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 2646.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 2634.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 2601.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 2564.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 2517.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 2402.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 2401.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 2383.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 2353.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 2325.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 2299.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 2287.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 2270.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 2248.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 2233.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2224.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 2186.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 2186.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 2158.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 2109.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 2090.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 2088.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 2072.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 2046.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 2033.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 2027.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 2018.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 2014.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1995.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1949.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1874.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1873.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1844.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1843.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1810.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1765.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1717.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1688.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1665.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1587.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1578.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1525.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1466.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1460.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1458.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1437.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1270.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1250.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1245.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 947.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 880.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2284.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 2284.2
FF:10176-103C5 60 years, female 2284.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 1059.7
Pig sample Sample description nTPM
Putamen
nTPM: 1059.7
Samples: 4

Max nTPM: 1454.6
Min nTPM: 888.8
Sample A Female 1454.6
Sample B Female 888.8
Sample C Male 999.5
Sample D Male 895.9

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