MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:112.0 nTPM
HPA:112.0 nTPM
GTEx:96.0 nTPM
FANTOM5:380.0 Scaled Tags Per Million
Pig:43.9 nTPM
Mouse:440.0 nTPM
Allen mouse:13.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.6
2411 Female, age 72, unknown 114.1
2019 Male, age 18, unknown 111.6
1833 Male, age 53, unknown 109.5
1830 Male, age 51, unknown 107.0
1870 Female, age 42, unknown 106.2
2828 Female, age 72, unknown 99.9
2219 Male, age 76, both hemispheres 98.4
1827 Male, age 72, unknown 93.3
2666 Male, age 74, left hemisphere 86.5
2586 Male, age 75, left hemisphere 79.5
Dorsal raphe nucleus
nTPM: 89.6
2016 Female, age 72, unknown 94.7
2750 Male, age 76, both hemispheres 93.8
1828 Male, age 53, unknown 92.9
2298 Female, age 72, unknown 86.3
2047 Male, age 72, unknown 80.2
Inferior colliculus
nTPM: 93.1
2097 Female, age 72, unknown 98.4
1848 Female, age 42, unknown 92.8
1890 Male, age 53, unknown 92.6
2849 Male, age 72, unknown 88.5
Median raphe nucleus
nTPM: 81.6
2220 Male, age 76, midline 81.6
Pedunculopontine tegmental nucleus
nTPM: 100.7
2334 Male, age 80, both hemispheres 105.1
2338 Male, age 61, both hemispheres 98.9
1921 Female, age 85, both hemispheres 98.2
Periaquaductal grey, anterior
nTPM: 83.8
2502 Female, age 75, unknown 90.1
1947 Male, age 18, unknown 85.8
1795 Male, age 51, unknown 75.6
Periaquaductal grey, dorsal
nTPM: 83.3
2464 Female, age 72, unknown 96.2
1831 Male, age 72, unknown 81.3
2850 Male, age 76, both hemispheres 79.9
1840 Male, age 53, unknown 75.9
Periaquaductal grey, lateral
nTPM: 83.0
2272 Male, age 74, both hemispheres 85.2
2053 Male, age 18, unknown 82.3
2140 Male, age 76, both hemispheres 81.7
Pretectal area
nTPM: 90.8
1815 Male, age 53, unknown 102.6
1817 Female, age 42, unknown 101.8
2007 Male, age 72, unknown 96.3
2316 Male, age 76, right hemisphere 95.9
2667 Female, age 75, unknown 91.4
2273 Male, age 74, both hemispheres 86.5
2825 Male, age 18, unknown 85.8
2407 Male, age 75, both hemispheres 85.5
2224 Female, age 72, unknown 84.4
1944 Female, age 72, unknown 84.2
1816 Male, age 51, unknown 83.9
Red nucleus
nTPM: 112.0
1821 Female, age 72, unknown 145.7
1904 Male, age 53, unknown 125.0
1865 Male, age 51, unknown 121.6
1954 Female, age 42, unknown 118.2
2785 Male, age 18, unknown 116.4
2769 Male, age 72, unknown 115.7
2503 Female, age 72, unknown 114.2
2227 Male, age 72, unknown 111.8
2823 Male, age 76, right hemisphere 109.7
2725 Female, age 75, unknown 94.5
2588 Male, age 74, left hemisphere 92.3
2584 Male, age 75, left hemisphere 79.2
Substantia nigra
nTPM: 91.8
2409 Female, age 72, unknown 107.9
1889 Female, age 72, unknown 101.4
1851 Male, age 51, unknown 96.3
2241 Male, age 72, unknown 94.2
2590 Female, age 75, unknown 89.1
2699 Male, age 18, unknown 89.0
2583 Male, age 75, right hemisphere 88.0
1941 Male, age 53, unknown 87.5
1916 Female, age 42, unknown 87.0
2665 Male, age 74, both hemispheres 77.3
Superior colliculus
nTPM: 94.5
1895 Male, age 76, right hemisphere 105.2
2587 Male, age 74, left hemisphere 104.4
1913 Female, age 42, unknown 103.7
1995 Male, age 72, unknown 101.0
1839 Male, age 51, unknown 97.8
2668 Female, age 75, unknown 96.2
1796 Male, age 53, unknown 88.4
2087 Female, age 72, unknown 88.0
2261 Male, age 18, unknown 84.5
2664 Male, age 75, both hemispheres 75.5
Ventral tegmental area
nTPM: 91.2
2410 Female, age 72, unknown 108.3
1915 Female, age 42, unknown 91.5
2218 Male, age 76, both hemispheres 90.3
2223 Female, age 72, unknown 90.1
1942 Male, age 51, unknown 86.9
2021 Male, age 53, unknown 80.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.0
Samples: 139

Max nTPM: 610.9
Min nTPM: 32.4
Std nTPM: 60.8
Median nTPM: 80.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 610.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 308.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 243.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 214.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 203.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 202.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 200.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 187.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 180.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 174.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 165.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 380.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 380.0
FF:10158-103A5 76 years, female 380.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.9
Pig sample Sample description nTPM
Midbrain
nTPM: 35.1
Samples: 4

Max nTPM: 64.3
Min nTPM: 15.3
Sample A Female 15.3
Sample B Female 64.3
Sample C Male 25.8
Sample D Male 34.9
Periaqueductal gray
nTPM: 39.0
Samples: 3

Max nTPM: 55.3
Min nTPM: 25.6
Sample B Female 55.3
Sample C Male 36.1
Sample D Male 25.6
Substantia nigra
nTPM: 27.6
Samples: 4

Max nTPM: 31.7
Min nTPM: 21.7
Sample A Female 31.4
Sample B Female 31.7
Sample C Male 25.7
Sample D Male 21.7
Superior colliculi
nTPM: 43.9
Samples: 4

Max nTPM: 62.4
Min nTPM: 31.0
Sample A Female 50.4
Sample B Female 62.4
Sample C Male 31.8
Sample D Male 31.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 440.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 440.0
Samples: 4

Max nTPM: 452.6
Min nTPM: 426.7
Sample A Male 452.6
Sample B Male 451.5
Sample C Female 426.7
Sample D Female 429.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.6
72103831 Antisense, RP_051017_03_D11, Mouse strain C57BL/6J (56 days, male) 15.2
69014434 Antisense, RP_050310_01_B02, Mouse strain C57BL/6J (56 days, male) 11.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.