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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:390.4 nTPM
GTEx:390.4 nTPM
FANTOM5:56.5 Scaled Tags Per Million
Pig:121.0 nTPM
Mouse:629.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 390.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 390.4
Samples: 105

Max nTPM: 647.3
Min nTPM: 189.0
Std nTPM: 81.0
Median nTPM:
137_1 83 years, male 647.3
452_1 88 years, female 582.5
501_1 88 years, male 569.3
142_1 61 years, female 535.1
149_1 88 years, male 535.1
414_1 84 years, female 531.1
404_1 82 years, female 526.7
17_1 71 years, male 517.0
295_1 61 years, female 508.7
503_1 68 years, male 495.4
394_1 75 years, female 486.9
246_1 77 years, male 486.0
81_1 67 years, male 483.0
319_1 81 years, male 478.5
189_1 76 years, male 474.0
264_1 73 years, female 474.0
351_1 91 years, male 468.8
356_1 87 years, female 464.2
506_1 65 years, male 464.1
389_1 86 years, female 463.6
286_1 68 years, female 462.4
99_1 64 years, male 456.5
379_1 60 years, male 452.9
518_1 75 years, female 452.1
413_1 59 years, female 450.4
313_1 79 years, female 448.7
491_1 89 years, female 444.4
308_1 70 years, female 442.6
120_1 70 years, female 436.7
126_1 63 years, male 435.1
9_1 66 years, female 433.8
109_1 81 years, female 433.0
396_1 62 years, male 432.0
466_1 57 years, female 427.6
43_1 64 years, female 425.3
4_1 88 years, female 421.5
18_1 88 years, male 416.9
229_1 69 years, female 414.6
254_1 77 years, female 407.9
42_1 85 years, male 406.8
375_1 74 years, female 406.4
251_1 78 years, male 403.0
386_1 76 years, male 400.1
315_1 62 years, female 398.9
335_1 73 years, female 398.5
405_1 91 years, male 396.7
173_1 67 years, male 395.9
35_1 74 years, female 395.2
162_1 79 years, female 392.4
32_1 67 years, male 389.0
314_1 67 years, male 387.3
266_1 85 years, male 387.1
265_1 87 years, male 386.0
354_1 81 years, female 385.5
499_1 55 years, female 385.5
377_1 82 years, female 383.6
320_1 89 years, female 376.8
237_1 82 years, male 375.5
415_1 77 years, female 370.5
349_1 83 years, male 367.6
406_1 79 years, male 363.7
526_1 61 years, male 363.4
352_1 62 years, male 362.2
288_1 66 years, female 361.2
292_1 71 years, male 359.3
117_1 61 years, male 358.6
447_1 81 years, male 357.0
355_1 70 years, female 355.6
316_1 62 years, male 354.7
348_1 84 years, male 354.1
119_1 70 years, female 353.7
145_1 84 years, male 352.4
172_1 72 years, female 351.6
495_1 57 years, female 350.4
217_1 76 years, male 349.1
376_1 75 years, female 345.6
318_1 68 years, male 345.4
350_1 84 years, female 345.4
384_1 83 years, male 336.3
115_1 83 years, male 334.9
480_1 63 years, male 334.2
425_1 59 years, female 327.0
6_1 73 years, female 325.1
490_1 67 years, female 320.6
41_1 94 years, female 319.0
353_1 82 years, female 318.0
2_1 77 years, female 317.8
291_1 76 years, male 317.5
468_1 89 years, male 316.1
163_1 78 years, male 314.9
243_1 75 years, male 314.1
153_1 70 years, female 310.8
177_1 74 years, male 303.9
517_1 88 years, male 303.1
324_1 76 years, male 302.1
89_1 63 years, male 301.0
139_1 64 years, female 293.2
347_1 72 years, male 281.1
322_1 76 years, male 268.2
321_1 62 years, female 260.7
293_1 68 years, female 241.2
311_1 78 years, male 235.3
307_1 66 years, female 230.4
317_1 60 years, male 219.7
218_1 71 years, female 189.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 56.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 56.5
FF:10030-101E3 24-65 years, mixed 56.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 121.0
Pig sample Sample description nTPM
Retina
nTPM: 121.0
Samples: 4

Max nTPM: 145.7
Min nTPM: 96.2
Sample A Female 102.3
Sample B Female 145.7
Sample C Male 139.9
Sample D Male 96.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 629.5
Mouse sample Sample description nTPM
Retina
nTPM: 629.5
Samples: 4

Max nTPM: 654.1
Min nTPM: 602.7
Sample A Male 654.1
Sample B Male 623.1
Sample C Female 602.7
Sample D Female 637.9

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by the Knut & Alice Wallenberg Foundation.