MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:283.3 nTPM
HPA:283.3 nTPM
GTEx:356.9 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:34.5 nTPM
Mouse:115.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 283.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 279.1
2586 Male, age 75, left hemisphere 299.6
1830 Male, age 51, unknown 285.3
2666 Male, age 74, left hemisphere 282.9
2828 Female, age 72, unknown 282.7
1833 Male, age 53, unknown 280.2
1870 Female, age 42, unknown 278.0
2019 Male, age 18, unknown 275.1
2411 Female, age 72, unknown 274.0
1827 Male, age 72, unknown 270.0
2219 Male, age 76, both hemispheres 262.8
Dorsal raphe nucleus
nTPM: 267.8
1828 Male, age 53, unknown 274.1
2047 Male, age 72, unknown 269.4
2016 Female, age 72, unknown 268.8
2750 Male, age 76, both hemispheres 267.7
2298 Female, age 72, unknown 258.8
Inferior colliculus
nTPM: 265.1
2849 Male, age 72, unknown 278.8
1890 Male, age 53, unknown 265.1
1848 Female, age 42, unknown 260.6
2097 Female, age 72, unknown 255.8
Median raphe nucleus
nTPM: 260.0
2220 Male, age 76, midline 260.0
Pedunculopontine tegmental nucleus
nTPM: 267.8
2338 Male, age 61, both hemispheres 279.2
2334 Male, age 80, both hemispheres 267.9
1921 Female, age 85, both hemispheres 256.3
Periaquaductal grey, anterior
nTPM: 267.9
2502 Female, age 75, unknown 271.3
1947 Male, age 18, unknown 266.4
1795 Male, age 51, unknown 265.9
Periaquaductal grey, dorsal
nTPM: 271.1
2850 Male, age 76, both hemispheres 275.7
1831 Male, age 72, unknown 275.4
2464 Female, age 72, unknown 270.5
1840 Male, age 53, unknown 262.6
Periaquaductal grey, lateral
nTPM: 272.0
2140 Male, age 76, both hemispheres 278.4
2272 Male, age 74, both hemispheres 269.1
2053 Male, age 18, unknown 268.7
Pretectal area
nTPM: 269.6
2407 Male, age 75, both hemispheres 282.4
2825 Male, age 18, unknown 278.5
2316 Male, age 76, right hemisphere 275.3
1815 Male, age 53, unknown 273.2
2007 Male, age 72, unknown 269.6
1817 Female, age 42, unknown 269.5
2273 Male, age 74, both hemispheres 268.8
2667 Female, age 75, unknown 264.3
1944 Female, age 72, unknown 263.8
1816 Male, age 51, unknown 260.3
2224 Female, age 72, unknown 260.2
Red nucleus
nTPM: 283.3
2584 Male, age 75, left hemisphere 298.0
2588 Male, age 74, left hemisphere 287.1
1865 Male, age 51, unknown 285.4
1904 Male, age 53, unknown 285.4
2823 Male, age 76, right hemisphere 284.6
2785 Male, age 18, unknown 282.7
2769 Male, age 72, unknown 282.1
2227 Male, age 72, unknown 281.7
2503 Female, age 72, unknown 281.6
2725 Female, age 75, unknown 278.8
1821 Female, age 72, unknown 276.9
1954 Female, age 42, unknown 275.2
Substantia nigra
nTPM: 271.8
2699 Male, age 18, unknown 290.0
2409 Female, age 72, unknown 280.0
2590 Female, age 75, unknown 279.0
2583 Male, age 75, right hemisphere 278.5
2665 Male, age 74, both hemispheres 276.5
1851 Male, age 51, unknown 274.8
1941 Male, age 53, unknown 268.3
1889 Female, age 72, unknown 263.2
1916 Female, age 42, unknown 258.7
2241 Male, age 72, unknown 249.0
Superior colliculus
nTPM: 275.9
1913 Female, age 42, unknown 294.6
1995 Male, age 72, unknown 293.5
2664 Male, age 75, both hemispheres 286.7
1839 Male, age 51, unknown 274.5
2587 Male, age 74, left hemisphere 274.0
1895 Male, age 76, right hemisphere 273.8
2668 Female, age 75, unknown 272.8
2087 Female, age 72, unknown 265.6
1796 Male, age 53, unknown 265.0
2261 Male, age 18, unknown 258.6
Ventral tegmental area
nTPM: 269.0
2021 Male, age 53, unknown 276.0
2223 Female, age 72, unknown 273.9
1942 Male, age 51, unknown 269.6
2410 Female, age 72, unknown 267.0
1915 Female, age 42, unknown 265.0
2218 Male, age 76, both hemispheres 262.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 356.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 356.9
Samples: 139

Max nTPM: 1010.3
Min nTPM: 141.2
Std nTPM: 126.5
Median nTPM: 342.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1010.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 731.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 700.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 631.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 611.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 595.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 587.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 561.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 557.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 534.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 530.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.1
FF:10158-103A5 76 years, female 75.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.5
Pig sample Sample description nTPM
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 56.0
Min nTPM: 21.3
Sample A Female 56.0
Sample B Female 32.1
Sample C Male 26.0
Sample D Male 21.3
Periaqueductal gray
nTPM: 27.3
Samples: 3

Max nTPM: 29.6
Min nTPM: 24.2
Sample B Female 28.2
Sample C Male 29.6
Sample D Male 24.2
Substantia nigra
nTPM: 34.5
Samples: 4

Max nTPM: 40.8
Min nTPM: 30.8
Sample A Female 40.8
Sample B Female 35.6
Sample C Male 30.9
Sample D Male 30.8
Superior colliculi
nTPM: 33.2
Samples: 4

Max nTPM: 41.2
Min nTPM: 26.8
Sample A Female 36.0
Sample B Female 41.2
Sample C Male 26.8
Sample D Male 28.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 115.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.8
Samples: 4

Max nTPM: 122.3
Min nTPM: 110.6
Sample A Male 122.3
Sample B Male 110.6
Sample C Female 113.4
Sample D Female 116.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73497547 Antisense, RP_051121_01_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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