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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:505.9 nTPM
HPA:201.4 nTPM
GTEx:505.9 nTPM
FANTOM5:159.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA045101
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Not detected
Goblet cells High
Paneth cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 201.4
overview
Male, age 65
Small intestine sample 232
nTPM: 222.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 227.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 184.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 171

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 505.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 505.9
Samples: 187

Max nTPM: 905.0
Min nTPM: 284.1
Std nTPM: 126.9
Median nTPM: 488.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 905.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 904.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 877.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 842.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 831.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 806.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 806.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 782.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 752.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 727.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 719.2
GTEX-1192X-2526-SM-59868 50-59 years, male 717.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 707.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 691.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 690.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 687.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 683.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 683.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 678.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 673.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 673.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 671.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 669.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 659.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 658.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 642.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 641.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 634.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 634.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 627.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 624.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 622.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 620.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 609.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 609.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 605.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 601.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 600.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 600.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 599.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 591.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 589.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 588.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 582.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 582.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 579.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 578.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 574.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 572.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 572.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 571.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 570.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 569.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 569.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 568.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 568.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 566.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 564.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 561.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 553.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 552.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 551.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 548.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 547.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 547.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 547.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 539.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 538.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 536.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 533.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 532.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 531.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 525.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 521.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 519.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 518.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 516.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 515.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 514.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 513.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 512.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 508.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 506.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 504.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 503.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 499.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 498.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 494.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 493.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 491.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 490.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 489.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 488.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 488.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 488.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 487.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 486.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 484.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 484.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 481.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 481.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 481.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 478.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 477.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 471.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 469.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 469.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 468.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 467.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 466.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 461.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 460.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 460.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 456.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 454.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 453.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 453.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 452.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 451.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 449.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 449.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 448.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 442.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 441.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 440.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 436.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 434.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 434.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 429.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 421.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 419.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 419.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 418.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 413.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 413.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 412.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 412.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 411.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 404.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 404.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 403.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 403.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 399.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 399.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 397.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 396.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 392.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 390.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 387.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 384.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 383.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 383.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 382.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 381.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 381.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 376.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 376.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 374.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 373.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 372.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 371.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 371.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 368.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 367.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 364.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 363.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 362.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 361.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 359.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 356.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 356.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 352.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 349.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 348.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 348.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 348.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 345.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 345.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 341.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 336.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 331.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 324.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 307.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 306.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 304.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 303.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 284.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 159.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 159.9
FF:10024-101D6 15,40,85 years, mixed 159.9

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