HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		18.339
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:49.3 nTPM
HPA:49.3 nTPM
GTEx:94.5 nTPM
FANTOM5:120.4 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:84.6 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002907Antibody HPA005835
Glial cells MediumHigh
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA005835
Hippocampal formation mean intensity 18.339
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 9.369
Molecular layer of the dentate gyrus 3.102
Granular dentate gyrus 16.035
CA1 - oriens layer 7.834
CA1 - pyramidal layer 12.455
CA1 - radiatum layer 3.053
CA2 - oriens layer 3.805
CA2 - pyramidal layer 11.680
CA2 - radiatum layer 1.356
CA3 - oriens layer 3.108
CA3 - pyramidal layer 10.510
CA3 - radiatum layer 0.761
Stratum lucidum 9.701
Lacunosum moleculare 18.339
Subiculum 5.919

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.3
Sample id Sample description nTPM
Hippocampus
nTPM: 48.1
2529 Female, age 94, left hemisphere 50.6
1898 Male, age 80, left hemisphere 48.5
1911 Female, age 85, right hemisphere 47.9
2148 Female, age 91, left hemisphere 47.7
1855 Male, age 76, left hemisphere 47.6
2621 Female, age 67, right hemisphere 46.6
Dentate gyrus
nTPM: 47.6
2528 Male, age 74, both hemispheres 50.2
2530 Female, age 94, left hemisphere 50.1
2010 Male, age 76, both hemispheres 48.3
2246 Female, age 85, both hemispheres 47.4
1927 Female, age 91, both hemispheres 45.4
2531 Female, age 67, both hemispheres 43.9
Entorhinal gyrus
nTPM: 48.9
2117 Female, age 91, right hemisphere 52.5
2764 Male, age 80, right hemisphere 50.3
1938 Female, age 85, left hemisphere 48.9
1787 Male, age 76, left hemisphere 48.7
2613 Female, age 94, left hemisphere 48.2
2686 Male, age 75, right hemisphere 45.1
Hippocampus, CA1
nTPM: 48.2
2527 Male, age 74, both hemispheres 52.4
2082 Female, age 91, right hemisphere 49.7
2749 Male, age 80, left hemisphere 48.2
1873 Female, age 85, both hemispheres 46.4
2045 Male, age 76, both hemispheres 44.2
Hippocampus, CA2
nTPM: 49.3
2249 Male, age 74, both hemispheres 53.4
2113 Female, age 91, right hemisphere 49.2
1963 Male, age 80, left hemisphere 48.5
2437 Female, age 94, left hemisphere 48.5
1940 Female, age 85, left hemisphere 48.3
1892 Male, age 76, both hemispheres 48.2
Hippocampus, CA3
nTPM: 47.6
2436 Male, age 74, both hemispheres 53.3
1867 Male, age 76, both hemispheres 47.8
1891 Female, age 85, both hemispheres 46.9
2137 Male, age 80, left hemisphere 46.3
2620 Female, age 94, left hemisphere 46.2
2861 Female, age 67, both hemispheres 44.9
Parahippocampal cortex
nTPM: 47.4
1933 Female, age 85, both hemispheres 49.7
1990 Female, age 91, right hemisphere 48.9
2250 Female, age 67, right hemisphere 48.7
2245 Female, age 91, both hemispheres 47.5
2532 Female, age 72, left hemisphere 47.3
2692 Male, age 74, both hemispheres 47.2
1850 Male, age 80, both hemispheres 47.1
2622 Female, age 67, right hemisphere 46.6
2018 Male, age 76, both hemispheres 45.6
2693 Female, age 94, both hemispheres 45.0
Perirhinal gyrus
nTPM: 48.0
1794 Male, age 80, right hemisphere 49.7
1847 Female, age 91, left hemisphere 49.4
1841 Female, age 85, right hemisphere 47.8
2521 Female, age 94, right hemisphere 47.2
2848 Male, age 76, right hemisphere 46.0
Subiculum
nTPM: 48.3
2619 Male, age 74, both hemispheres 49.6
1977 Female, age 85, both hemispheres 49.5
2729 Female, age 91, right hemisphere 49.3
1901 Male, age 80, both hemispheres 48.1
2438 Female, age 94, left hemisphere 47.0
2042 Male, age 76, both hemispheres 46.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 94.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 94.5
Samples: 197

Max nTPM: 160.5
Min nTPM: 57.3
Std nTPM: 17.9
Median nTPM: 93.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 160.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 144.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 143.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 139.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 139.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 131.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 131.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 129.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 127.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 126.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 125.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 120.4
FF:10153-102I9 76 years, female 133.2
FF:10169-103B7 60 years, female 107.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 8.6
Sample A Female 15.6
Sample B Female 11.6
Sample C Male 16.7
Sample D Male 8.6
Entorhinal cortex
nTPM: 9.8
Samples: 4

Max nTPM: 13.2
Min nTPM: 6.4
Sample A Female 8.8
Sample B Female 10.7
Sample C Male 13.2
Sample D Male 6.4
Subiculum
nTPM: 11.5
Samples: 4

Max nTPM: 13.9
Min nTPM: 8.0
Sample A Female 13.0
Sample B Female 11.0
Sample C Male 13.9
Sample D Male 8.0
Ventral hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 20.5
Min nTPM: 9.8
Sample A Female 12.6
Sample B Female 9.8
Sample C Male 20.5
Sample D Male 12.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 84.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 64.0
Samples: 4

Max nTPM: 72.7
Min nTPM: 58.1
Sample A Male 64.3
Sample B Male 60.8
Sample C Female 72.7
Sample D Female 58.1
Hippocampal formation
nTPM: 84.6
Samples: 4

Max nTPM: 91.0
Min nTPM: 74.0
Sample A Male 87.3
Sample B Male 74.0
Sample C Female 86.2
Sample D Female 91.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69671863 Antisense, RP_050428_02_E05, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.