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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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15.945
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:55.0 nTPM
HPA:55.0 nTPM
FANTOM5:135.1 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:87.6 nTPM
Allen mouse:2.4 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA005835
Thalamus mean intensity 15.945
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Medial geniculate nucleus 0.967
Parafascicular thalamic nucleus 2.630
Pregeniculate nucleus -
Stria terminalis 14.865
Zona incerta 0.707
Anterodorsal thalamic nucleus -
Reticular thalamic nucleus 1.607
Vental anterior thalamic nucleus 1.239
Medial habenular nucleus 7.176
Laterodorsal thalamic area 2.022
Paraventricular thalamic nucleus 15.945
Central medial thalamic area 1.545
Ventral lateral thalamic area 0.435
Ventral medial thalamic area 0.678
Lateral habenulal nucleus 6.356
Ventral posterior thalamus -
Anterior pretactal nucleus 1.397
Retromammillary nucleus -

THALAMUS - HPA Brain RNA-seq
Max nTPM 55.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 51.0
2497 Male, age 66, unknown 51.3
2032 Female, age 42, unknown 51.1
2396 Male, age 61, right hemisphere 50.5
Centromedial thalamic nucleus
nTPM: 50.1
2401 Male, age 76, right hemisphere 52.0
2279 Female, age 85, left hemisphere 48.3
Habenula
nTPM: 51.4
2203 Male, age 61, left hemisphere 52.3
1957 Male, age 80, both hemispheres 51.8
2276 Male, age 66, unknown 50.9
2252 Male, age 62, unknown 50.8
Lateral geniculate body
nTPM: 54.1
2857 Male, age 74, right hemisphere 57.5
2575 Female, age 94, right hemisphere 56.0
2399 Male, age 61, left hemisphere 55.9
2106 Female, age 67, right hemisphere 54.7
2035 Female, age 72, unknown 53.9
1953 Male, age 62, unknown 52.5
2841 Male, age 80, both hemispheres 51.8
2659 Male, age 66, unknown 50.3
Lateral thalamic nuclei
nTPM: 53.3
2573 Female, age 94, left hemisphere 61.1
2765 Female, age 67, both hemispheres 54.0
2661 Female, age 72, unknown 53.2
1903 Male, age 76, left hemisphere 51.0
2577 Male, age 74, both hemispheres 47.2
Medial dorsal thalamic nucleus
nTPM: 53.2
2572 Female, age 94, right hemisphere 65.3
2498 Male, age 66, unknown 54.2
2576 Male, age 74, both hemispheres 53.6
2492 Male, age 75, right hemisphere 53.5
1810 Male, age 48, unknown 53.3
2026 Male, age 62, unknown 53.1
1859 Male, age 76, both hemispheres 52.6
1971 Male, age 61, right hemisphere 52.0
2402 Female, age 67, both hemispheres 51.6
2039 Female, age 72, unknown 51.1
2283 Male, age 80, right hemisphere 50.8
2660 Female, age 72, unknown 50.7
1930 Female, age 42, unknown 50.4
Medial geniculate body
nTPM: 51.7
2650 Female, age 94, left hemisphere 61.9
2657 Male, age 74, right hemisphere 53.1
2207 Male, age 80, right hemisphere 50.6
2217 Female, age 72, unknown 50.1
1811 Female, age 42, unknown 49.8
2571 Male, age 75, right hemisphere 48.1
2049 Male, age 76, both hemispheres 48.0
Nucleus reuniens
nTPM: 50.8
2205 Male, age 80, left hemisphere 52.3
2212 Female, age 67, left hemisphere 50.5
2210 Female, age 85, left hemisphere 49.5
Nucleus rhomboideus
nTPM: 50.0
2206 Male, age 80, both hemispheres 50.9
2213 Female, age 67, left hemisphere 49.8
2280 Female, age 85, left hemisphere 49.2
Posterior thalamic nucleus
nTPM: 55.0
2649 Female, age 94, both hemispheres 64.6
2655 Male, age 74, right hemisphere 55.9
2495 Female, age 67, right hemisphere 51.5
2266 Male, age 76, right hemisphere 48.0
Pulvinar
nTPM: 52.8
2724 Male, age 74, right hemisphere 56.7
2398 Male, age 61, left hemisphere 54.7
1972 Male, age 62, unknown 54.3
2499 Male, age 66, unknown 53.7
1932 Male, age 80, right hemisphere 53.4
2582 Female, age 72, unknown 52.2
1899 Female, age 42, unknown 52.0
1929 Male, age 48, unknown 50.9
2214 Male, age 76, right hemisphere 50.2
2496 Female, age 67, right hemisphere 50.1
Subthalamic nucleus
nTPM: 51.5
2406 Female, age 72, unknown 55.0
2124 Male, age 62, unknown 53.2
2282 Male, age 61, both hemispheres 52.4
2216 Male, age 48, unknown 51.3
2056 Female, age 72, unknown 51.2
2779 Female, age 42, unknown 50.2
2275 Male, age 66, unknown 49.5
2658 Male, age 74, both hemispheres 49.2
Ventral posterolateral thalamic nucleus
nTPM: 51.7
2740 Male, age 76, right hemisphere 55.8
2570 Male, age 75, right hemisphere 53.7
2197 Male, age 80, both hemispheres 53.0
2397 Male, age 61, right hemisphere 51.0
2581 Female, age 72, unknown 49.2
2578 Male, age 74, both hemispheres 47.8
Ventral posteromedial thalamic nucleus
nTPM: 52.1
2281 Male, age 75, right hemisphere 55.9
2202 Male, age 61, left hemisphere 52.7
2758 Male, age 80, both hemispheres 52.4
2127 Male, age 76, right hemisphere 49.8
2653 Male, age 74, both hemispheres 49.6
Ventral thalamic nuclei
nTPM: 51.3
1845 Male, age 48, unknown 52.9
2580 Male, age 66, unknown 52.8
2858 Female, age 72, unknown 52.2
1860 Male, age 76, both hemispheres 51.5
2285 Male, age 62, unknown 51.3
2204 Male, age 80, both hemispheres 51.0
2291 Female, age 72, unknown 51.0
1912 Female, age 42, unknown 50.7
2652 Male, age 74, left hemisphere 48.7
Ventromedial nucleus
nTPM: 52.1
1982 Female, age 72, unknown 54.3
1822 Female, age 42, unknown 49.8
Zona incerta
nTPM: 48.0
2208 Male, age 80, right hemisphere 49.3
2215 Male, age 66, unknown 48.5
2403 Male, age 62, unknown 48.3
2822 Male, age 74, right hemisphere 47.4
2663 Female, age 72, unknown 46.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 135.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 135.1
FF:10154-103A1 76 years, female 135.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 18.4
Pig sample Sample description nTPM
Thalamus
nTPM: 18.4
Samples: 4

Max nTPM: 21.8
Min nTPM: 15.1
Sample A Female 18.7
Sample B Female 15.1
Sample C Male 21.8
Sample D Male 17.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 87.6
Samples: 4

Max nTPM: 101.7
Min nTPM: 78.0
Sample A Male 91.1
Sample B Male 79.5
Sample C Female 101.7
Sample D Female 78.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.4
69671863 Antisense, RP_050428_02_E05, Mouse strain C57BL/6J (56 days, male) 2.4

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