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RPS16
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:834.3 nTPM
HPA:834.3 nTPM
FANTOM5:259.2 Scaled Tags Per Million
Pig:785.3 nTPM
Allen mouse:6.5 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 834.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 801.2
2188 Female, age 91, both hemispheres 821.2
2090 Male, age 80, both hemispheres 806.5
2301 Female, age 85, both hemispheres 802.6
1984 Male, age 76, both hemispheres 774.5
Dorsal cochlear nucleus
nTPM: 793.3
2802 Male, age 74, right hemisphere 813.4
2187 Female, age 91, both hemispheres 804.1
2378 Male, age 80, both hemispheres 795.8
2370 Male, age 61, both hemispheres 789.7
2058 Male, age 76, both hemispheres 763.4
Dorsal tegmental nucleus
nTPM: 798.1
2358 Male, age 61, both hemispheres 810.7
2326 Male, age 74, both hemispheres 808.7
2083 Male, age 80, both hemispheres 803.4
1936 Male, age 76, left hemisphere 769.6
Dorsolateral tegmental area
nTPM: 786.2
2337 Male, age 61, both hemispheres 821.9
2654 Male, age 80, both hemispheres 805.1
2751 Female, age 85, both hemispheres 784.2
2360 Male, age 74, both hemispheres 766.2
2141 Male, age 76, both hemispheres 753.5
Kolliker-Fuse nucleus
nTPM: 795.4
2793 Female, age 91, left hemisphere 804.7
2315 Male, age 76, right hemisphere 804.4
2163 Male, age 80, both hemispheres 777.0
Lateral lemniscal nuclei
nTPM: 764.8
2169 Male, age 76, both hemispheres 774.7
2320 Female, age 91, left hemisphere 772.0
2746 Female, age 85, left hemisphere 764.5
2453 Male, age 74, right hemisphere 758.7
2036 Male, age 80, both hemispheres 754.2
Lateral parabrachial nucleus
nTPM: 794.0
2792 Male, age 76, both hemispheres 814.1
2013 Male, age 80, both hemispheres 811.1
2139 Female, age 85, right hemisphere 784.0
2790 Male, age 61, both hemispheres 766.8
Lateral vestibular nucleus
nTPM: 780.6
2311 Male, age 80, both hemispheres 805.0
2184 Male, age 76, both hemispheres 756.1
Locus coeruleus
nTPM: 758.3
2720 Male, age 74, both hemispheres 790.3
2162 Male, age 80, both hemispheres 775.0
2123 Female, age 91, both hemispheres 767.4
2317 Female, age 72, unknown 762.7
1980 Male, age 76, both hemispheres 740.4
2014 Male, age 55, unknown 739.6
2788 Male, age 74, unknown 732.5
Medial olivary nucleus
nTPM: 834.3
1943 Male, age 61, both hemispheres 855.9
2138 Female, age 91, both hemispheres 829.8
1962 Male, age 76, both hemispheres 825.9
2851 Male, age 80, both hemispheres 825.4
Medial parabrachial nucleus
nTPM: 785.4
2170 Female, age 91, both hemispheres 814.6
2854 Male, age 80, both hemispheres 790.0
2463 Female, age 85, right hemisphere 779.4
2156 Male, age 61, both hemispheres 775.1
2786 Male, age 76, both hemispheres 768.2
Medial periolivary nuclei
nTPM: 765.5
2063 Male, age 76, both hemispheres 779.0
2458 Female, age 91, both hemispheres 777.6
2081 Male, age 80, both hemispheres 777.2
2791 Male, age 74, right hemisphere 748.9
2171 Female, age 85, both hemispheres 744.9
Motor facial nucleus
nTPM: 774.7
2795 Female, age 91, both hemispheres 793.3
2697 Female, age 85, both hemispheres 789.7
2126 Male, age 61, both hemispheres 776.6
2365 Male, age 74, right hemisphere 770.9
2062 Male, age 76, both hemispheres 766.1
2327 Male, age 80, both hemispheres 751.8
Motor trigeminal nucleus
nTPM: 774.2
2321 Female, age 91, both hemispheres 786.1
2335 Male, age 61, both hemispheres 783.4
2560 Male, age 74, both hemispheres 779.6
2309 Male, age 76, both hemispheres 763.6
2079 Male, age 80, both hemispheres 758.1
Nuclei of the trapezoid body
nTPM: 765.0
1983 Male, age 76, both hemispheres 801.8
2166 Male, age 80, both hemispheres 769.1
2368 Female, age 91, both hemispheres 762.9
2159 Male, age 61, both hemispheres 751.2
2735 Female, age 85, both hemispheres 740.0
Paramedian reticular nucleus
nTPM: 776.1
2052 Male, age 76, both hemispheres 784.0
2050 Female, age 85, both hemispheres 783.6
2313 Male, age 61, both hemispheres 770.1
2057 Male, age 80, both hemispheres 766.6
Pontine nuclei
nTPM: 779.0
2787 Female, age 85, both hemispheres 796.5
2319 Female, age 91, both hemispheres 795.3
1863 Male, age 55, unknown 786.9
1968 Male, age 76, left hemisphere 784.7
2454 Male, age 74, left hemisphere 773.9
2109 Female, age 72, unknown 772.0
2115 Male, age 80, left hemisphere 771.8
2727 Male, age 61, right hemisphere 751.0
Pontine raphe nucleus
nTPM: 757.6
2122 Female, age 85, midline 758.3
2853 Male, age 76, midline 756.8
Posteroventral cochlear nucleus
nTPM: 801.4
2341 Male, age 80, both hemispheres 831.5
2135 Female, age 91, both hemispheres 831.3
2371 Male, age 61, both hemispheres 805.8
2070 Male, age 76, both hemispheres 772.2
2752 Female, age 85, both hemispheres 766.3
Principal sensory trigeminal nucleus
nTPM: 760.6
2367 Female, age 91, left hemisphere 782.7
2324 Male, age 76, both hemispheres 763.1
2158 Male, age 61, both hemispheres 753.6
2008 Male, age 80, left hemisphere 743.0
Reticular pontine nucleus, caudal
nTPM: 778.2
2559 Male, age 74, both hemispheres 789.6
2092 Male, age 76, both hemispheres 788.9
2457 Female, age 91, both hemispheres 786.5
2332 Male, age 80, right hemisphere 747.9
Reticular pontine nucleus, oral
nTPM: 780.2
2366 Female, age 91, both hemispheres 808.9
1939 Male, age 80, both hemispheres 787.5
2167 Male, age 76, both hemispheres 783.4
2012 Female, age 85, both hemispheres 764.3
2361 Male, age 74, both hemispheres 756.9
Reticulotegmental nucleus
nTPM: 775.9
2452 Male, age 74, both hemispheres 792.4
2322 Female, age 91, both hemispheres 787.1
2333 Male, age 80, both hemispheres 770.6
2325 Male, age 76, both hemispheres 753.4
Spinal trigeminal nucleus, oral
nTPM: 765.3
2164 Male, age 80, both hemispheres 781.4
1978 Male, age 76, both hemispheres 766.3
2737 Female, age 85, both hemispheres 748.0
Subcoeruleus area
nTPM: 779.7
2451 Male, age 74, both hemispheres 801.9
2369 Female, age 85, left hemisphere 787.5
1958 Male, age 80, both hemispheres 782.0
2323 Female, age 91, left hemisphere 769.6
2089 Male, age 76, left hemisphere 757.3
Superior olive
nTPM: 769.9
2020 Male, age 76, both hemispheres 797.3
2561 Female, age 91, both hemispheres 781.4
2329 Male, age 80, right hemisphere 759.6
1875 Female, age 85, both hemispheres 758.4
2364 Male, age 74, right hemisphere 752.9
Superior vestibular nucleus
nTPM: 790.1
2015 Male, age 80, both hemispheres 800.0
2383 Male, age 74, both hemispheres 798.0
2061 Male, age 76, both hemispheres 772.3
Ventral periolivary nuclei
nTPM: 771.8
2023 Male, age 76, both hemispheres 798.4
2794 Female, age 91, left hemisphere 771.1
2165 Male, age 80, both hemispheres 765.0
2130 Female, age 85, both hemispheres 752.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 774.2
1959 Male, age 76, both hemispheres 790.2
2161 Male, age 80, both hemispheres 781.3
2456 Female, age 91, both hemispheres 776.9
2840 Female, age 85, both hemispheres 772.7
2359 Male, age 61, both hemispheres 769.0
2449 Male, age 74, both hemispheres 755.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 259.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 259.2
FF:10165-103B3 76 years, female 271.3
FF:10182-103D2 60 years, female 247.1
Pons
Scaled Tags Per Million: 193.1
FF:10033-101E6 18-54 years, mixed 193.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 785.3
Pig sample Sample description nTPM
Pons
nTPM: 785.3
Samples: 4

Max nTPM: 962.3
Min nTPM: 611.5
Sample A Female 773.0
Sample B Female 611.5
Sample C Male 962.3
Sample D Male 794.5

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 6.5
69818379 Antisense, RP_050510_04_H09, Mouse strain C57BL/6J (56 days, male) 6.5

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