MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:794.2 nTPM
HPA:794.2 nTPM
GTEx:1110.9 nTPM
FANTOM5:341.8 Scaled Tags Per Million
Pig:752.9 nTPM
Mouse:32.7 nTPM
Allen mouse:9.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 794.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 780.0
2666 Male, age 74, left hemisphere 803.0
2586 Male, age 75, left hemisphere 802.2
1870 Female, age 42, unknown 797.0
2828 Female, age 72, unknown 782.5
2411 Female, age 72, unknown 779.9
1833 Male, age 53, unknown 773.9
1830 Male, age 51, unknown 773.2
2219 Male, age 76, both hemispheres 768.5
1827 Male, age 72, unknown 760.1
2019 Male, age 18, unknown 760.0
Dorsal raphe nucleus
nTPM: 772.4
2016 Female, age 72, unknown 780.4
2750 Male, age 76, both hemispheres 773.4
1828 Male, age 53, unknown 772.2
2298 Female, age 72, unknown 771.4
2047 Male, age 72, unknown 764.6
Inferior colliculus
nTPM: 771.7
1890 Male, age 53, unknown 784.2
2849 Male, age 72, unknown 774.7
1848 Female, age 42, unknown 766.9
2097 Female, age 72, unknown 760.9
Median raphe nucleus
nTPM: 755.4
2220 Male, age 76, midline 755.4
Pedunculopontine tegmental nucleus
nTPM: 778.8
2334 Male, age 80, both hemispheres 791.9
2338 Male, age 61, both hemispheres 789.9
1921 Female, age 85, both hemispheres 754.5
Periaquaductal grey, anterior
nTPM: 771.0
2502 Female, age 75, unknown 794.2
1795 Male, age 51, unknown 759.8
1947 Male, age 18, unknown 759.1
Periaquaductal grey, dorsal
nTPM: 762.9
1831 Male, age 72, unknown 774.6
1840 Male, age 53, unknown 765.6
2464 Female, age 72, unknown 755.9
2850 Male, age 76, both hemispheres 755.4
Periaquaductal grey, lateral
nTPM: 757.7
2053 Male, age 18, unknown 781.4
2140 Male, age 76, both hemispheres 749.7
2272 Male, age 74, both hemispheres 741.9
Pretectal area
nTPM: 764.3
2316 Male, age 76, right hemisphere 781.7
1815 Male, age 53, unknown 775.5
1817 Female, age 42, unknown 773.1
2825 Male, age 18, unknown 769.0
2407 Male, age 75, both hemispheres 767.6
2007 Male, age 72, unknown 765.6
2224 Female, age 72, unknown 763.3
1816 Male, age 51, unknown 758.0
1944 Female, age 72, unknown 756.3
2667 Female, age 75, unknown 754.9
2273 Male, age 74, both hemispheres 742.2
Red nucleus
nTPM: 794.2
2503 Female, age 72, unknown 829.6
1865 Male, age 51, unknown 810.4
1904 Male, age 53, unknown 802.2
1821 Female, age 72, unknown 799.7
2769 Male, age 72, unknown 799.3
2584 Male, age 75, left hemisphere 798.4
2227 Male, age 72, unknown 792.0
2725 Female, age 75, unknown 791.8
2785 Male, age 18, unknown 784.8
2588 Male, age 74, left hemisphere 780.6
1954 Female, age 42, unknown 771.2
2823 Male, age 76, right hemisphere 770.8
Substantia nigra
nTPM: 789.3
2699 Male, age 18, unknown 837.2
1851 Male, age 51, unknown 814.4
2665 Male, age 74, both hemispheres 808.3
2409 Female, age 72, unknown 797.4
1916 Female, age 42, unknown 782.1
2590 Female, age 75, unknown 780.0
1889 Female, age 72, unknown 777.6
2241 Male, age 72, unknown 768.7
2583 Male, age 75, right hemisphere 766.4
1941 Male, age 53, unknown 761.1
Superior colliculus
nTPM: 779.3
2587 Male, age 74, left hemisphere 808.1
1913 Female, age 42, unknown 805.8
1995 Male, age 72, unknown 805.7
1796 Male, age 53, unknown 777.9
2664 Male, age 75, both hemispheres 775.2
1839 Male, age 51, unknown 774.6
2668 Female, age 75, unknown 773.4
1895 Male, age 76, right hemisphere 772.1
2087 Female, age 72, unknown 750.9
2261 Male, age 18, unknown 749.6
Ventral tegmental area
nTPM: 781.5
1915 Female, age 42, unknown 804.0
2223 Female, age 72, unknown 787.1
2410 Female, age 72, unknown 785.1
2021 Male, age 53, unknown 777.1
1942 Male, age 51, unknown 771.0
2218 Male, age 76, both hemispheres 764.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1110.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1110.9
Samples: 139

Max nTPM: 3461.6
Min nTPM: 365.2
Std nTPM: 437.8
Median nTPM: 1018.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3461.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2798.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2513.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2423.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2001.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1840.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1825.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1778.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1773.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1723.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1610.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 341.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 341.8
FF:10158-103A5 76 years, female 341.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 752.9
Pig sample Sample description nTPM
Midbrain
nTPM: 694.4
Samples: 4

Max nTPM: 985.1
Min nTPM: 497.1
Sample A Female 985.1
Sample B Female 781.0
Sample C Male 514.2
Sample D Male 497.1
Periaqueductal gray
nTPM: 558.8
Samples: 3

Max nTPM: 612.4
Min nTPM: 527.0
Sample B Female 612.4
Sample C Male 536.9
Sample D Male 527.0
Substantia nigra
nTPM: 729.7
Samples: 4

Max nTPM: 1003.3
Min nTPM: 537.0
Sample A Female 1003.3
Sample B Female 799.3
Sample C Male 537.0
Sample D Male 579.1
Superior colliculi
nTPM: 752.9
Samples: 4

Max nTPM: 909.4
Min nTPM: 606.1
Sample A Female 909.4
Sample B Female 840.2
Sample C Male 606.1
Sample D Male 655.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 45.2
Min nTPM: 24.6
Sample A Male 45.2
Sample B Male 26.7
Sample C Female 24.6
Sample D Female 34.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.5
69818379 Antisense, RP_050510_04_H09, Mouse strain C57BL/6J (56 days, male) 9.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.