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RPS16
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:353.9 nTPM
GTEx:353.9 nTPM
FANTOM5:538.7 Scaled Tags Per Million
Pig:188.8 nTPM
Mouse:73.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 353.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 353.9
Samples: 105

Max nTPM: 699.5
Min nTPM: 123.8
Std nTPM: 110.3
Median nTPM:
218_1 71 years, female 699.5
355_1 70 years, female 549.8
354_1 81 years, female 545.9
352_1 62 years, male 537.8
452_1 88 years, female 531.7
356_1 87 years, female 525.8
319_1 81 years, male 522.3
377_1 82 years, female 513.8
353_1 82 years, female 507.3
322_1 76 years, male 507.1
321_1 62 years, female 499.8
349_1 83 years, male 490.8
243_1 75 years, male 489.1
35_1 74 years, female 485.7
447_1 81 years, male 474.4
394_1 75 years, female 472.8
389_1 86 years, female 470.4
379_1 60 years, male 466.5
376_1 75 years, female 461.0
153_1 70 years, female 460.7
335_1 73 years, female 457.4
4_1 88 years, female 452.5
237_1 82 years, male 450.7
295_1 61 years, female 445.1
350_1 84 years, female 442.1
384_1 83 years, male 442.1
173_1 67 years, male 441.2
172_1 72 years, female 441.0
163_1 78 years, male 435.0
351_1 91 years, male 432.0
286_1 68 years, female 429.0
6_1 73 years, female 424.6
396_1 62 years, male 410.0
386_1 76 years, male 409.0
506_1 65 years, male 407.3
406_1 79 years, male 405.2
405_1 91 years, male 400.9
189_1 76 years, male 400.6
404_1 82 years, female 400.6
347_1 72 years, male 398.6
375_1 74 years, female 397.4
503_1 68 years, male 396.2
251_1 78 years, male 391.9
2_1 77 years, female 391.4
120_1 70 years, female 389.6
99_1 64 years, male 378.7
293_1 68 years, female 377.8
320_1 89 years, female 375.3
316_1 62 years, male 373.5
145_1 84 years, male 365.8
229_1 69 years, female 360.6
17_1 71 years, male 354.6
291_1 76 years, male 352.5
318_1 68 years, male 351.6
177_1 74 years, male 347.4
137_1 83 years, male 343.6
292_1 71 years, male 343.0
480_1 63 years, male 339.3
317_1 60 years, male 336.4
246_1 77 years, male 323.0
425_1 59 years, female 322.2
517_1 88 years, male 313.5
18_1 88 years, male 311.9
266_1 85 years, male 310.4
115_1 83 years, male 310.0
518_1 75 years, female 306.0
526_1 61 years, male 304.4
348_1 84 years, male 293.7
41_1 94 years, female 292.9
265_1 87 years, male 286.7
311_1 78 years, male 284.7
126_1 63 years, male 281.8
109_1 81 years, female 280.6
42_1 85 years, male 276.6
117_1 61 years, male 275.6
264_1 73 years, female 273.6
162_1 79 years, female 270.5
9_1 66 years, female 263.9
468_1 89 years, male 260.2
254_1 77 years, female 259.6
499_1 55 years, female 254.9
81_1 67 years, male 250.1
139_1 64 years, female 246.3
142_1 61 years, female 244.0
314_1 67 years, male 242.9
307_1 66 years, female 241.7
315_1 62 years, female 239.6
217_1 76 years, male 237.6
288_1 66 years, female 236.7
415_1 77 years, female 235.8
32_1 67 years, male 230.7
324_1 76 years, male 229.1
119_1 70 years, female 228.9
495_1 57 years, female 228.8
414_1 84 years, female 226.1
308_1 70 years, female 225.7
466_1 57 years, female 205.4
313_1 79 years, female 200.9
89_1 63 years, male 198.2
501_1 88 years, male 180.2
490_1 67 years, female 173.1
43_1 64 years, female 169.4
491_1 89 years, female 159.7
413_1 59 years, female 145.0
149_1 88 years, male 123.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 538.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 538.7
FF:10030-101E3 24-65 years, mixed 538.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 188.8
Pig sample Sample description nTPM
Retina
nTPM: 188.8
Samples: 4

Max nTPM: 207.2
Min nTPM: 176.1
Sample A Female 177.0
Sample B Female 207.2
Sample C Male 194.7
Sample D Male 176.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.7
Mouse sample Sample description nTPM
Retina
nTPM: 73.6
Samples: 4

Max nTPM: 157.4
Min nTPM: 36.2
Sample A Male 56.1
Sample B Male 44.8
Sample C Female 157.4
Sample D Female 36.2

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by the Knut & Alice Wallenberg Foundation.