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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:143.3 nTPM
HPA:143.3 nTPM
GTEx:246.9 nTPM
FANTOM5:340.9 Scaled Tags Per Million
Pig:281.2 nTPM
Mouse:604.3 nTPM
Allen mouse:18.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 143.3
Sample id Sample description nTPM
Amygdala
nTPM: 77.0
2517 Female, age 94, left hemisphere 102.2
1987 Female, age 91, left hemisphere 101.5
2814 Male, age 76, right hemisphere 95.0
2514 Male, age 75, right hemisphere 57.2
2695 Female, age 67, right hemisphere 28.9
Basal amygdala
nTPM: 121.0
2685 Female, age 94, left hemisphere 199.0
2243 Female, age 91, right hemisphere 177.8
1955 Male, age 76, both hemispheres 111.9
2110 Male, age 80, left hemisphere 111.5
2609 Male, age 75, right hemisphere 63.2
2827 Female, age 67, right hemisphere 62.5
Central amygdala
nTPM: 105.7
2826 Female, age 94, left hemisphere 162.3
2701 Female, age 91, right hemisphere 117.1
2239 Male, age 80, left hemisphere 109.3
1905 Male, age 76, both hemispheres 90.6
2515 Male, age 75, right hemisphere 49.1
Corticomedial amygdala
nTPM: 134.2
2242 Female, age 91, right hemisphere 209.4
2829 Male, age 80, left hemisphere 171.5
2535 Female, age 67, right hemisphere 137.7
2429 Female, age 94, left hemisphere 133.2
2240 Male, age 76, both hemispheres 98.3
2428 Male, age 75, right hemisphere 54.9
Lateral amygdala
nTPM: 94.7
2534 Female, age 94, left hemisphere 204.3
1883 Male, age 76, both hemispheres 115.7
2255 Female, age 91, right hemisphere 98.4
2256 Male, age 80, left hemisphere 74.0
2516 Male, age 75, right hemisphere 42.9
2830 Female, age 67, right hemisphere 33.0
Stria terminalis, bed nucleus
nTPM: 143.3
1974 Female, age 91, both hemispheres 171.2
2486 Female, age 94, both hemispheres 149.1
2201 Male, age 74, unknown 109.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 246.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 246.9
Samples: 152

Max nTPM: 823.2
Min nTPM: 55.3
Std nTPM: 111.7
Median nTPM: 229.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 823.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 559.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 553.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 515.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 501.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 483.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 452.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 450.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 435.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 431.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 431.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 428.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 407.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 405.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 405.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 388.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 380.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 380.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 379.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 373.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 360.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 360.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 358.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 354.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 350.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 345.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 338.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 336.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 334.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 324.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 324.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 323.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 313.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 312.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 311.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 310.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 306.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 304.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 300.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 298.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 296.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 289.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 288.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 287.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 277.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 276.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 276.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 273.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 272.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 269.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 267.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 266.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 265.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 264.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 261.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 261.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 257.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 253.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 252.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 252.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 249.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 248.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 248.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 247.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 247.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 247.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 246.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 242.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 239.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 237.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 235.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 234.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 231.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 231.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 230.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 229.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 228.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 228.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 228.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 225.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 224.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 221.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 221.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 221.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 216.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 213.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 210.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 209.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 209.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 207.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 206.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 206.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 205.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 204.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 203.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 202.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 198.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 193.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 193.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 192.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 191.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 190.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 181.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 180.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 179.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 178.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 176.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 176.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 173.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 170.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 170.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 169.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 168.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 167.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 162.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 159.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 157.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 157.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 155.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 153.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 151.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 150.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 150.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 149.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 146.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 144.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 144.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 143.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 142.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 141.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 138.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 137.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 136.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 136.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 130.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 128.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 122.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 121.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 120.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 103.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 103.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 101.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 100.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 92.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 83.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 70.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 55.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 340.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 340.9
FF:10151-102I7 76 years, female 340.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 281.2
Pig sample Sample description nTPM
Amygdala
nTPM: 281.3
Samples: 4

Max nTPM: 445.7
Min nTPM: 174.8
Sample A Female 445.7
Sample B Female 174.8
Sample C Male 226.2
Sample D Male 278.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 604.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 604.3
Samples: 4

Max nTPM: 649.8
Min nTPM: 583.4
Sample A Male 588.2
Sample B Male 595.6
Sample C Female 649.8
Sample D Female 583.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.4
77464848 Antisense, RP_070129_02_B12, Mouse strain C57BL/6J (56 days, male) 27.1
808 Antisense, RP_Baylor_102968, Mouse strain C57BL/6J (56 days, male) 9.7
809 Antisense, RP_Baylor_102968, Mouse strain C57BL/6J (56 days, male) 5.6

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