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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:63.8 nTPM
HPA:63.8 nTPM
GTEx:169.3 nTPM
FANTOM5:135.4 Scaled Tags Per Million
Pig:188.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 63.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 51.5
2194 Female, age 79, both hemispheres 77.3
2565 Male, age 75, midline 76.7
2816 Male, age 47, midline 44.3
1981 Female, age 72, midline 43.8
2048 Male, age 55, midline 15.5
Cervical spinal cord, dorsal horn
nTPM: 63.8
2297 Male, age 75, both hemispheres 72.9
2069 Male, age 47, both hemispheres 72.0
1877 Male, age 55, unknown 61.3
2721 Male, age 90, both hemispheres 61.3
2173 Female, age 72, unknown 57.8
2296 Male, age 66, both hemispheres 57.7
Cervical spinal cord, ventral horn
nTPM: 52.4
2820 Female, age 79, both hemispheres 100.9
2068 Male, age 55, unknown 71.3
2480 Male, age 75, both hemispheres 54.4
2295 Male, age 66, both hemispheres 39.6
2809 Male, age 90, both hemispheres 31.9
2098 Female, age 72, unknown 16.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 169.3
Samples: 159

Max nTPM: 346.1
Min nTPM: 89.0
Std nTPM: 46.6
Median nTPM: 161.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 346.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 329.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 320.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 311.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 306.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 283.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 276.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 262.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 246.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 243.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 238.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 232.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 231.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 229.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 229.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 229.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 229.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 226.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 223.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 222.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 219.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 218.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 218.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 217.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 212.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 210.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 208.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 207.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 202.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 198.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 195.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 195.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 194.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 194.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 191.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 189.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 189.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 188.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 188.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 187.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 186.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 186.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 185.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 184.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 183.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 182.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 181.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 181.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 180.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 180.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 179.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 179.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 179.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 179.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 178.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 178.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 178.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 178.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 177.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 175.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 174.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 173.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 172.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 171.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 171.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 170.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 169.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 169.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 168.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 167.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 166.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 165.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 165.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 164.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 163.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 163.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 162.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 162.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 161.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 161.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 160.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 160.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 160.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 159.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 159.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 158.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 158.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 157.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 157.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 157.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 156.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 155.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 154.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 154.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 153.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 153.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 151.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 151.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 149.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 149.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 149.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 148.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 148.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 147.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 147.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 147.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 147.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 147.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 145.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 145.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 145.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 144.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 144.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 143.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 140.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 138.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 138.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 137.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 136.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 136.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 135.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 135.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 134.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 133.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 131.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 127.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 126.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 125.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 125.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 125.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 124.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 123.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 122.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 122.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 121.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 121.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 120.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 119.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 119.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 119.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 118.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 117.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 116.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 114.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 112.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 112.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 112.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 112.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 109.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 102.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 102.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 101.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 97.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 95.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 89.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 135.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 135.4
FF:10181-103D1 60 years, female 165.6
FF:10159-103A6 76 years, female 105.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 188.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 188.9
Samples: 4

Max nTPM: 273.4
Min nTPM: 122.8
Sample A Female 273.4
Sample B Female 133.7
Sample C Male 122.8
Sample D Male 225.6
Ventral spinal cord
nTPM: 167.7
Samples: 4

Max nTPM: 192.9
Min nTPM: 134.5
Sample A Female 177.7
Sample B Female 165.5
Sample C Male 192.9
Sample D Male 134.5

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