MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:128.5 nTPM
HPA:128.5 nTPM
GTEx:239.5 nTPM
FANTOM5:119.5 Scaled Tags Per Million
Pig:282.8 nTPM
Mouse:183.6 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.7
2666 Male, age 74, left hemisphere 140.9
2219 Male, age 76, both hemispheres 126.2
1827 Male, age 72, unknown 94.6
2586 Male, age 75, left hemisphere 89.7
2411 Female, age 72, unknown 82.1
1870 Female, age 42, unknown 80.1
1833 Male, age 53, unknown 65.8
2828 Female, age 72, unknown 58.9
2019 Male, age 18, unknown 49.5
1830 Male, age 51, unknown 49.2
Dorsal raphe nucleus
nTPM: 81.3
2047 Male, age 72, unknown 102.9
2298 Female, age 72, unknown 102.6
1828 Male, age 53, unknown 82.7
2750 Male, age 76, both hemispheres 72.6
2016 Female, age 72, unknown 45.7
Inferior colliculus
nTPM: 64.1
2849 Male, age 72, unknown 76.6
1848 Female, age 42, unknown 66.2
2097 Female, age 72, unknown 59.3
1890 Male, age 53, unknown 54.4
Median raphe nucleus
nTPM: 123.4
2220 Male, age 76, midline 123.4
Pedunculopontine tegmental nucleus
nTPM: 84.6
1921 Female, age 85, both hemispheres 96.6
2334 Male, age 80, both hemispheres 96.2
2338 Male, age 61, both hemispheres 61.0
Periaquaductal grey, anterior
nTPM: 81.3
1947 Male, age 18, unknown 93.1
1795 Male, age 51, unknown 91.6
2502 Female, age 75, unknown 59.1
Periaquaductal grey, dorsal
nTPM: 60.1
1840 Male, age 53, unknown 86.8
2850 Male, age 76, both hemispheres 59.0
1831 Male, age 72, unknown 56.2
2464 Female, age 72, unknown 38.3
Periaquaductal grey, lateral
nTPM: 46.0
2053 Male, age 18, unknown 51.2
2272 Male, age 74, both hemispheres 45.8
2140 Male, age 76, both hemispheres 41.0
Pretectal area
nTPM: 79.4
2007 Male, age 72, unknown 115.2
1816 Male, age 51, unknown 103.8
1944 Female, age 72, unknown 102.3
1817 Female, age 42, unknown 98.8
2224 Female, age 72, unknown 94.2
2667 Female, age 75, unknown 86.9
1815 Male, age 53, unknown 86.3
2825 Male, age 18, unknown 76.7
2407 Male, age 75, both hemispheres 56.9
2316 Male, age 76, right hemisphere 30.8
2273 Male, age 74, both hemispheres 21.5
Red nucleus
nTPM: 45.6
2584 Male, age 75, left hemisphere 113.0
1821 Female, age 72, unknown 53.8
2785 Male, age 18, unknown 53.7
2725 Female, age 75, unknown 51.8
2588 Male, age 74, left hemisphere 50.1
2769 Male, age 72, unknown 38.1
2227 Male, age 72, unknown 34.9
1954 Female, age 42, unknown 34.6
1904 Male, age 53, unknown 32.0
2503 Female, age 72, unknown 31.4
2823 Male, age 76, right hemisphere 29.7
1865 Male, age 51, unknown 24.5
Substantia nigra
nTPM: 128.5
1916 Female, age 42, unknown 242.2
1851 Male, age 51, unknown 166.8
2665 Male, age 74, both hemispheres 146.0
1941 Male, age 53, unknown 135.0
2699 Male, age 18, unknown 121.1
2241 Male, age 72, unknown 115.0
1889 Female, age 72, unknown 109.4
2409 Female, age 72, unknown 100.5
2583 Male, age 75, right hemisphere 90.5
2590 Female, age 75, unknown 58.2
Superior colliculus
nTPM: 67.1
2668 Female, age 75, unknown 134.0
1796 Male, age 53, unknown 97.9
2087 Female, age 72, unknown 67.8
2261 Male, age 18, unknown 67.6
1839 Male, age 51, unknown 65.7
1895 Male, age 76, right hemisphere 65.7
2664 Male, age 75, both hemispheres 60.0
2587 Male, age 74, left hemisphere 54.3
1913 Female, age 42, unknown 33.7
1995 Male, age 72, unknown 24.0
Ventral tegmental area
nTPM: 126.4
1915 Female, age 42, unknown 173.8
2218 Male, age 76, both hemispheres 168.2
2410 Female, age 72, unknown 137.2
1942 Male, age 51, unknown 116.3
2223 Female, age 72, unknown 87.3
2021 Male, age 53, unknown 75.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 239.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 239.5
Samples: 139

Max nTPM: 717.5
Min nTPM: 78.5
Std nTPM: 145.5
Median nTPM: 197.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 717.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 675.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 672.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 661.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 586.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 570.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 565.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 564.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 557.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 523.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 520.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.5
FF:10158-103A5 76 years, female 119.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 282.8
Pig sample Sample description nTPM
Midbrain
nTPM: 269.9
Samples: 4

Max nTPM: 385.6
Min nTPM: 133.6
Sample A Female 133.6
Sample B Female 198.5
Sample C Male 385.6
Sample D Male 361.8
Periaqueductal gray
nTPM: 233.7
Samples: 3

Max nTPM: 314.9
Min nTPM: 185.1
Sample B Female 185.1
Sample C Male 314.9
Sample D Male 201.1
Substantia nigra
nTPM: 261.2
Samples: 4

Max nTPM: 384.0
Min nTPM: 105.6
Sample A Female 364.4
Sample B Female 190.6
Sample C Male 384.0
Sample D Male 105.6
Superior colliculi
nTPM: 282.8
Samples: 4

Max nTPM: 345.8
Min nTPM: 159.8
Sample A Female 345.8
Sample B Female 159.8
Sample C Male 301.0
Sample D Male 324.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 183.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 183.6
Samples: 4

Max nTPM: 188.4
Min nTPM: 178.9
Sample A Male 188.4
Sample B Male 180.7
Sample C Female 178.9
Sample D Female 186.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
77464848 Antisense, RP_070129_02_B12, Mouse strain C57BL/6J (56 days, male) 16.9
808 Antisense, RP_Baylor_102968, Mouse strain C57BL/6J (56 days, male) 1.5
809 Antisense, RP_Baylor_102968, Mouse strain C57BL/6J (56 days, male) 1.2
810 Sense, RPS_Baylor_37025, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.