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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:457.5 nTPM
GTEx:398.6 nTPM
FANTOM5:320.8 Scaled Tags Per Million
Pig:504.9 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 457.5
Sample id Sample description nTPM
Putamen
nTPM: 457.5
1829 Male, age 74, unknown 520.9
2466 Female, age 79, unknown 473.9
2647 Male, age 75, left hemisphere 458.8
2482 Female, age 94, left hemisphere 457.1
1937 Female, age 91, right hemisphere 454.5
2489 Female, age 72, unknown 449.7
1838 Male, age 80, right hemisphere 387.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 398.6
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 398.6
Samples: 205

Max nTPM: 1345.4
Min nTPM: 91.0
Std nTPM: 149.8
Median nTPM: 395.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1345.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 833.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 786.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 717.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 697.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 696.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 688.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 679.5
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 670.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 648.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 629.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 617.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 613.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 613.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 610.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 604.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 598.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 595.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 580.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 579.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 567.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 567.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 555.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 549.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 544.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 543.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 539.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 535.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 528.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 525.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 524.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 516.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 513.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 512.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 510.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 510.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 509.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 509.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 509.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 508.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 505.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 505.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 499.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 497.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 488.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 487.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 487.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 484.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 481.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 471.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 465.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 463.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 463.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 462.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 457.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 455.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 454.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 452.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 452.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 449.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 448.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 446.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 445.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 445.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 444.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 443.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 442.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 442.0
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 441.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 441.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 441.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 440.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 438.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 438.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 436.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 436.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 435.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 435.7
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 435.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 435.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 434.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 431.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 429.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 427.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 427.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 426.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 425.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 424.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 424.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 422.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 422.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 420.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 419.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 416.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 412.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 408.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 406.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 406.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 402.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 401.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 400.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 398.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 395.4
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 394.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 393.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 390.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 390.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 390.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 387.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 383.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 383.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 382.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 381.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 379.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 371.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 369.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 369.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 367.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 364.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 364.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 362.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 361.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 359.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 358.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 358.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 358.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 350.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 349.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 346.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 345.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 344.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 344.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 343.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 343.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 339.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 337.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 334.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 334.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 334.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 329.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 329.1
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 328.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 325.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 320.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 317.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 315.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 314.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 313.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 307.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 305.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 304.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 302.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 302.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 302.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 301.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 301.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 299.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 297.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 296.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 296.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 294.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 292.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 287.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 285.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 284.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 284.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 283.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 279.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 276.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 274.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 272.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 271.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 270.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 268.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 262.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 258.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 256.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 253.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 253.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 249.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 247.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 245.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 238.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 236.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 234.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 227.3
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 225.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 223.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 206.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 191.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 191.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 188.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 176.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 164.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 159.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 157.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 148.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 138.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 136.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 123.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 121.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 121.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 109.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 93.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 91.0
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 320.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 320.8
FF:10176-103C5 60 years, female 320.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 504.9
Pig sample Sample description nTPM
Putamen
nTPM: 504.9
Samples: 4

Max nTPM: 633.8
Min nTPM: 306.8
Sample A Female 633.8
Sample B Female 306.8
Sample C Male 452.9
Sample D Male 625.9

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