BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1592.2 nTPM
HPA:1592.2 nTPM
GTEx:1270.6 nTPM
FANTOM5:21.1 Scaled Tags Per Million
Mouse:604.1 nTPM
Allen mouse:2.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1592.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1538.9
2846 Female, age 79, unknown 1602.3
1857 Female, age 85, left hemisphere 1576.4
2290 Female, age 72, unknown 1572.0
1854 Male, age 80, left hemisphere 1553.2
1781 Male, age 74, unknown 1539.1
2481 Female, age 94, left hemisphere 1515.2
2289 Male, age 61, right hemisphere 1492.6
2288 Male, age 75, left hemisphere 1460.5
Claustrum
nTPM: 1482.3
2196 Female, age 79, unknown 1521.5
2491 Male, age 75, both hemispheres 1504.8
2292 Female, age 85, both hemispheres 1497.8
1956 Male, age 74, unknown 1495.2
2198 Male, age 80, both hemispheres 1490.1
2392 Female, age 94, both hemispheres 1489.3
2568 Male, age 61, both hemispheres 1450.8
2284 Female, age 91, both hemispheres 1446.7
2645 Female, age 72, unknown 1444.9
Globus pallidus, externus
nTPM: 1592.2
1996 Male, age 80, right hemisphere 1634.0
2772 Female, age 79, unknown 1617.3
2567 Female, age 72, unknown 1576.8
2646 Male, age 61, right hemisphere 1566.8
2395 Male, age 75, both hemispheres 1565.9
Globus pallidus, internus
nTPM: 1583.6
2483 Female, age 94, right hemisphere 1634.7
2037 Male, age 80, right hemisphere 1601.6
2566 Female, age 72, unknown 1590.1
2778 Female, age 91, both hemispheres 1581.7
2287 Male, age 75, right hemisphere 1574.8
1818 Male, age 74, unknown 1552.7
2111 Female, age 85, right hemisphere 1549.9
Nucleus accumbens
nTPM: 1538.6
1783 Male, age 74, unknown 1584.6
1806 Female, age 85, left hemisphere 1578.1
2732 Male, age 80, right hemisphere 1559.6
2698 Female, age 72, unknown 1550.9
1856 Female, age 91, right hemisphere 1538.9
2824 Male, age 61, right hemisphere 1501.7
2391 Female, age 94, left hemisphere 1500.7
2286 Male, age 75, left hemisphere 1494.3
Nucleus basalis of Meynert
nTPM: 1553.1
2569 Male, age 61, both hemispheres 1613.1
2484 Female, age 94, left hemisphere 1546.8
2393 Male, age 80, right hemisphere 1530.0
2821 Male, age 75, both hemispheres 1522.4
Nucleus of the diagonal band
nTPM: 1469.8
1812 Female, age 91, both hemispheres 1491.0
1979 Male, age 74, unknown 1490.8
2775 Male, age 80, right hemisphere 1466.8
2195 Female, age 85, both hemispheres 1452.1
2029 Male, age 61, right hemisphere 1448.4
Olfactory tubercle
nTPM: 1457.5
1846 Male, age 80, right hemisphere 1464.6
1998 Female, age 91, both hemispheres 1459.3
2856 Male, age 75, right hemisphere 1455.2
2487 Female, age 94, left hemisphere 1450.8
Putamen
nTPM: 1526.6
2466 Female, age 79, unknown 1567.6
1937 Female, age 91, right hemisphere 1538.9
2489 Female, age 72, unknown 1536.4
2482 Female, age 94, left hemisphere 1527.9
2647 Male, age 75, left hemisphere 1527.5
1838 Male, age 80, right hemisphere 1505.2
1829 Male, age 74, unknown 1482.6
Septal nuclei
nTPM: 1484.7
2199 Male, age 80, right hemisphere 1518.3
2394 Male, age 61, left hemisphere 1498.7
2031 Female, age 72, unknown 1498.0
2059 Female, age 85, both hemispheres 1494.8
1960 Male, age 74, unknown 1475.0
2009 Female, age 91, both hemispheres 1468.0
2629 Female, age 94, right hemisphere 1439.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1270.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1059.3
Samples: 246

Max nTPM: 3143.3
Min nTPM: 310.4
Std nTPM: 341.2
Median nTPM: 1016.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 3143.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2819.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1966.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1820.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1815.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1783.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1766.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1700.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1694.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1674.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1673.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1270.6
Samples: 246

Max nTPM: 4710.2
Min nTPM: 511.6
Std nTPM: 570.8
Median nTPM: 1154.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 4710.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 4296.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 4032.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 3193.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 2941.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 2713.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 2449.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 2439.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 2339.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 2290.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 2196.7
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Brain - Putamen (basal ganglia)
Average nTPM: 1194.5
Samples: 205

Max nTPM: 2840.0
Min nTPM: 445.6
Std nTPM: 379.2
Median nTPM: 1127.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 2840.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 2687.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 2552.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 2339.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 2230.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1995.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 1958.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1937.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1933.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 1918.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1906.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.1
FF:10164-103B2 76 years, female 21.1
Globus pallidus
Scaled Tags Per Million: 17.9
FF:10161-103A8 76 years, female 20.9
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 14.8
FF:10037-101F1 23-56 years, mixed 14.8
Putamen
Scaled Tags Per Million: 16.8
FF:10176-103C5 60 years, female 16.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 604.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 602.7
Samples: 4

Max nTPM: 631.1
Min nTPM: 549.8
Sample A Male 620.0
Sample B Male 609.7
Sample C Female 549.8
Sample D Female 631.1
Septum
nTPM: 604.1
Samples: 4

Max nTPM: 732.4
Min nTPM: 512.7
Sample A Male 512.7
Sample B Male 732.4
Sample C Female 602.8
Sample D Female 568.6
Ventral forebrain
nTPM: 554.3
Samples: 4

Max nTPM: 702.6
Min nTPM: 464.2
Sample A Male 503.0
Sample B Male 547.5
Sample C Female 702.6
Sample D Female 464.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.8
68633443 Antisense, RP_050125_02_H03, Mouse strain C57BL/6J (56 days, male) 3.0
72081492 Antisense, RP_051017_01_C08, Mouse strain C57BL/6J (56 days, male) 2.7
Pallidum
Expression energy: 2.8
72081492 Antisense, RP_051017_01_C08, Mouse strain C57BL/6J (56 days, male) 3.0
68633443 Antisense, RP_050125_02_H03, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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