MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1548.2 nTPM
HPA:1548.2 nTPM
GTEx:1342.9 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Mouse:348.4 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1548.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1528.4
2586 Male, age 75, left hemisphere 1604.7
2828 Female, age 72, unknown 1566.3
2666 Male, age 74, left hemisphere 1560.3
2411 Female, age 72, unknown 1533.1
1870 Female, age 42, unknown 1520.2
1830 Male, age 51, unknown 1520.0
1833 Male, age 53, unknown 1514.9
1827 Male, age 72, unknown 1514.1
2019 Male, age 18, unknown 1494.6
2219 Male, age 76, both hemispheres 1455.6
Dorsal raphe nucleus
nTPM: 1519.4
2016 Female, age 72, unknown 1537.0
2298 Female, age 72, unknown 1522.7
2750 Male, age 76, both hemispheres 1515.6
1828 Male, age 53, unknown 1511.2
2047 Male, age 72, unknown 1510.6
Inferior colliculus
nTPM: 1494.4
1890 Male, age 53, unknown 1509.8
2097 Female, age 72, unknown 1497.0
1848 Female, age 42, unknown 1493.2
2849 Male, age 72, unknown 1477.6
Median raphe nucleus
nTPM: 1487.2
2220 Male, age 76, midline 1487.2
Pedunculopontine tegmental nucleus
nTPM: 1521.1
2338 Male, age 61, both hemispheres 1578.6
2334 Male, age 80, both hemispheres 1522.2
1921 Female, age 85, both hemispheres 1462.5
Periaquaductal grey, anterior
nTPM: 1515.3
2502 Female, age 75, unknown 1545.0
1795 Male, age 51, unknown 1508.2
1947 Male, age 18, unknown 1492.7
Periaquaductal grey, dorsal
nTPM: 1506.7
1831 Male, age 72, unknown 1523.4
1840 Male, age 53, unknown 1515.7
2464 Female, age 72, unknown 1502.4
2850 Male, age 76, both hemispheres 1485.5
Periaquaductal grey, lateral
nTPM: 1510.1
2053 Male, age 18, unknown 1558.4
2140 Male, age 76, both hemispheres 1496.8
2272 Male, age 74, both hemispheres 1475.0
Pretectal area
nTPM: 1502.5
2316 Male, age 76, right hemisphere 1547.5
2407 Male, age 75, both hemispheres 1528.2
2825 Male, age 18, unknown 1509.7
1817 Female, age 42, unknown 1505.4
1815 Male, age 53, unknown 1505.2
2007 Male, age 72, unknown 1501.5
2224 Female, age 72, unknown 1499.6
1944 Female, age 72, unknown 1491.7
2273 Male, age 74, both hemispheres 1482.8
1816 Male, age 51, unknown 1481.7
2667 Female, age 75, unknown 1474.0
Red nucleus
nTPM: 1543.7
2503 Female, age 72, unknown 1602.4
2584 Male, age 75, left hemisphere 1585.1
1865 Male, age 51, unknown 1562.4
2769 Male, age 72, unknown 1561.1
2227 Male, age 72, unknown 1551.2
1821 Female, age 72, unknown 1544.5
1904 Male, age 53, unknown 1539.9
2725 Female, age 75, unknown 1537.8
2588 Male, age 74, left hemisphere 1532.3
2785 Male, age 18, unknown 1520.4
1954 Female, age 42, unknown 1507.0
2823 Male, age 76, right hemisphere 1480.4
Substantia nigra
nTPM: 1548.2
1851 Male, age 51, unknown 1610.2
2699 Male, age 18, unknown 1608.6
2665 Male, age 74, both hemispheres 1587.6
1916 Female, age 42, unknown 1557.3
2590 Female, age 75, unknown 1555.7
2583 Male, age 75, right hemisphere 1552.1
2409 Female, age 72, unknown 1535.4
2241 Male, age 72, unknown 1501.5
1941 Male, age 53, unknown 1487.2
1889 Female, age 72, unknown 1486.3
Superior colliculus
nTPM: 1531.9
2664 Male, age 75, both hemispheres 1573.9
1995 Male, age 72, unknown 1573.0
2587 Male, age 74, left hemisphere 1567.4
1913 Female, age 42, unknown 1561.8
1796 Male, age 53, unknown 1535.6
2668 Female, age 75, unknown 1525.2
2087 Female, age 72, unknown 1510.1
1839 Male, age 51, unknown 1507.0
2261 Male, age 18, unknown 1496.9
1895 Male, age 76, right hemisphere 1468.1
Ventral tegmental area
nTPM: 1537.5
2021 Male, age 53, unknown 1584.6
1915 Female, age 42, unknown 1564.1
2410 Female, age 72, unknown 1536.3
1942 Male, age 51, unknown 1520.9
2223 Female, age 72, unknown 1519.0
2218 Male, age 76, both hemispheres 1500.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1342.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1342.9
Samples: 139

Max nTPM: 4969.0
Min nTPM: 391.6
Std nTPM: 593.1
Median nTPM: 1269.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4969.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3262.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3189.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2847.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2710.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2678.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2313.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2210.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2203.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2161.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2046.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 348.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 348.4
Samples: 4

Max nTPM: 412.5
Min nTPM: 293.7
Sample A Male 412.5
Sample B Male 348.2
Sample C Female 293.7
Sample D Female 339.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
72081492 Antisense, RP_051017_01_C08, Mouse strain C57BL/6J (56 days, male) 4.9
68633443 Antisense, RP_050125_02_H03, Mouse strain C57BL/6J (56 days, male) 2.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.