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RPS19
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:370.4 nTPM
GTEx:370.4 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Mouse:473.4 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 370.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 370.4
Samples: 105

Max nTPM: 681.6
Min nTPM: 90.4
Std nTPM: 125.0
Median nTPM:
218_1 71 years, female 681.6
321_1 62 years, female 646.0
319_1 81 years, male 589.8
452_1 88 years, female 584.8
352_1 62 years, male 551.5
377_1 82 years, female 548.3
349_1 83 years, male 529.1
163_1 78 years, male 523.6
354_1 81 years, female 517.4
356_1 87 years, female 514.2
384_1 83 years, male 513.5
353_1 82 years, female 512.4
355_1 70 years, female 511.3
320_1 89 years, female 510.0
6_1 73 years, female 508.5
351_1 91 years, male 507.6
386_1 76 years, male 506.7
376_1 75 years, female 502.5
394_1 75 years, female 492.9
379_1 60 years, male 480.2
447_1 81 years, male 480.0
177_1 74 years, male 479.1
243_1 75 years, male 473.7
389_1 86 years, female 469.9
4_1 88 years, female 469.7
506_1 65 years, male 459.7
2_1 77 years, female 453.4
17_1 71 years, male 453.4
172_1 72 years, female 452.0
295_1 61 years, female 451.9
335_1 73 years, female 445.2
406_1 79 years, male 440.3
237_1 82 years, male 436.3
317_1 60 years, male 433.3
99_1 64 years, male 432.8
503_1 68 years, male 428.4
318_1 68 years, male 427.1
350_1 84 years, female 427.0
173_1 67 years, male 423.0
347_1 72 years, male 422.1
375_1 74 years, female 420.2
145_1 84 years, male 418.6
246_1 77 years, male 417.6
322_1 76 years, male 413.8
293_1 68 years, female 413.0
189_1 76 years, male 412.2
137_1 83 years, male 409.0
120_1 70 years, female 406.5
316_1 62 years, male 402.8
153_1 70 years, female 400.9
526_1 61 years, male 397.7
396_1 62 years, male 389.4
286_1 68 years, female 388.8
404_1 82 years, female 388.1
480_1 63 years, male 383.3
115_1 83 years, male 380.4
405_1 91 years, male 365.9
35_1 74 years, female 365.0
264_1 73 years, female 359.0
251_1 78 years, male 355.3
517_1 88 years, male 354.2
265_1 87 years, male 346.9
217_1 76 years, male 346.1
291_1 76 years, male 345.9
425_1 59 years, female 341.2
348_1 84 years, male 338.9
18_1 88 years, male 338.6
254_1 77 years, female 329.5
126_1 63 years, male 325.9
292_1 71 years, male 325.5
229_1 69 years, female 315.9
307_1 66 years, female 312.7
9_1 66 years, female 301.5
518_1 75 years, female 297.1
468_1 89 years, male 295.5
311_1 78 years, male 295.1
119_1 70 years, female 292.5
41_1 94 years, female 289.8
109_1 81 years, female 287.9
266_1 85 years, male 276.0
42_1 85 years, male 275.7
499_1 55 years, female 274.5
315_1 62 years, female 260.4
117_1 61 years, male 256.9
308_1 70 years, female 256.0
314_1 67 years, male 254.7
139_1 64 years, female 249.8
324_1 76 years, male 246.5
142_1 61 years, female 243.9
313_1 79 years, female 228.5
288_1 66 years, female 223.6
162_1 79 years, female 220.2
81_1 67 years, male 212.7
89_1 63 years, male 210.9
415_1 77 years, female 187.5
32_1 67 years, male 177.7
501_1 88 years, male 175.0
495_1 57 years, female 174.4
414_1 84 years, female 150.3
466_1 57 years, female 142.7
43_1 64 years, female 141.9
149_1 88 years, male 107.3
413_1 59 years, female 100.2
491_1 89 years, female 98.3
490_1 67 years, female 90.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 15.0
FF:10030-101E3 24-65 years, mixed 15.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 473.4
Mouse sample Sample description nTPM
Retina
nTPM: 473.4
Samples: 4

Max nTPM: 518.1
Min nTPM: 413.9
Sample A Male 518.1
Sample B Male 413.9
Sample C Female 504.3
Sample D Female 457.3

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by the Knut & Alice Wallenberg Foundation.