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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:121.1 nTPM
HPA:121.1 nTPM
GTEx:166.7 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:95.6 nTPM
Allen mouse:2.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 121.1
Sample id Sample description nTPM
Amygdala
nTPM: 121.1
2814 Male, age 76, right hemisphere 134.4
2695 Female, age 67, right hemisphere 124.4
2514 Male, age 75, right hemisphere 118.4
2517 Female, age 94, left hemisphere 115.3
1987 Female, age 91, left hemisphere 112.9
Basal amygdala
nTPM: 114.5
2609 Male, age 75, right hemisphere 123.2
1955 Male, age 76, both hemispheres 115.6
2827 Female, age 67, right hemisphere 114.6
2110 Male, age 80, left hemisphere 113.6
2685 Female, age 94, left hemisphere 113.5
2243 Female, age 91, right hemisphere 106.3
Central amygdala
nTPM: 119.4
1905 Male, age 76, both hemispheres 130.7
2826 Female, age 94, left hemisphere 128.2
2515 Male, age 75, right hemisphere 118.7
2239 Male, age 80, left hemisphere 110.3
2701 Female, age 91, right hemisphere 109.0
Corticomedial amygdala
nTPM: 111.2
2428 Male, age 75, right hemisphere 118.7
2829 Male, age 80, left hemisphere 114.2
2429 Female, age 94, left hemisphere 110.2
2240 Male, age 76, both hemispheres 109.2
2535 Female, age 67, right hemisphere 107.6
2242 Female, age 91, right hemisphere 107.0
Lateral amygdala
nTPM: 119.4
2516 Male, age 75, right hemisphere 128.2
1883 Male, age 76, both hemispheres 127.6
2534 Female, age 94, left hemisphere 120.1
2830 Female, age 67, right hemisphere 116.3
2256 Male, age 80, left hemisphere 113.6
2255 Female, age 91, right hemisphere 110.7
Stria terminalis, bed nucleus
nTPM: 107.3
1974 Female, age 91, both hemispheres 111.1
2486 Female, age 94, both hemispheres 105.5
2201 Male, age 74, unknown 105.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 166.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 166.7
Samples: 152

Max nTPM: 507.8
Min nTPM: 64.2
Std nTPM: 60.3
Median nTPM: 154.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 507.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 406.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 361.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 314.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 311.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 285.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 265.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 258.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 257.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 256.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 256.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 254.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 250.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 250.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 237.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 233.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 229.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 227.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 222.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 219.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 216.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 213.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 206.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 205.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 205.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 204.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 202.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 200.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 200.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 199.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 195.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 194.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 194.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 194.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 194.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 194.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 194.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 192.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 192.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 191.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 190.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 189.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 188.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 187.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 186.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 186.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 185.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 183.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 183.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 183.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 182.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 181.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 181.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 181.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 180.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 180.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 178.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 175.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 175.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 174.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 173.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 173.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 173.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 172.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 172.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 171.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 166.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 161.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 161.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 161.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 160.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 160.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 157.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 156.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 154.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 154.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 154.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 154.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 153.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 152.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 152.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 150.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 147.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 147.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 147.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 146.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 146.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 146.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 143.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 143.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 142.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 142.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 141.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 141.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 139.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 138.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 138.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 137.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 136.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 135.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 134.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 133.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 132.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 131.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 131.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 130.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 130.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 128.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 128.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 128.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 128.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 127.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 127.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 126.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 125.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 125.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 122.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 120.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 118.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 117.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 112.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 111.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 111.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 110.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 110.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 110.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 108.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 107.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 107.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 105.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 104.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 103.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 98.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 96.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 94.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 93.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 90.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 88.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 64.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 30.5
FF:10151-102I7 76 years, female 30.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.1
Pig sample Sample description nTPM
Amygdala
nTPM: 58.1
Samples: 4

Max nTPM: 75.7
Min nTPM: 40.4
Sample A Female 75.7
Sample B Female 55.3
Sample C Male 61.1
Sample D Male 40.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 95.6
Samples: 4

Max nTPM: 104.6
Min nTPM: 89.5
Sample A Male 92.1
Sample B Male 89.5
Sample C Female 96.3
Sample D Female 104.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
69262325 Antisense, RP_050303_02_A06, Mouse strain C57BL/6J (56 days, male) 2.1

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