MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:124.8 nTPM
HPA:124.8 nTPM
GTEx:181.8 nTPM
FANTOM5:76.1 Scaled Tags Per Million
Pig:84.1 nTPM
Mouse:81.4 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 124.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.2
2019 Male, age 18, unknown 125.5
2411 Female, age 72, unknown 122.1
2828 Female, age 72, unknown 120.9
1827 Male, age 72, unknown 120.7
1870 Female, age 42, unknown 120.2
2586 Male, age 75, left hemisphere 119.3
1833 Male, age 53, unknown 115.0
2666 Male, age 74, left hemisphere 115.0
2219 Male, age 76, both hemispheres 112.8
1830 Male, age 51, unknown 110.2
Dorsal raphe nucleus
nTPM: 115.3
1828 Male, age 53, unknown 120.7
2750 Male, age 76, both hemispheres 119.7
2298 Female, age 72, unknown 114.1
2047 Male, age 72, unknown 111.4
2016 Female, age 72, unknown 110.6
Inferior colliculus
nTPM: 112.7
1890 Male, age 53, unknown 117.3
2097 Female, age 72, unknown 116.2
1848 Female, age 42, unknown 110.2
2849 Male, age 72, unknown 107.2
Median raphe nucleus
nTPM: 114.6
2220 Male, age 76, midline 114.6
Pedunculopontine tegmental nucleus
nTPM: 119.3
2334 Male, age 80, both hemispheres 122.0
2338 Male, age 61, both hemispheres 118.7
1921 Female, age 85, both hemispheres 117.1
Periaquaductal grey, anterior
nTPM: 114.9
1795 Male, age 51, unknown 117.0
1947 Male, age 18, unknown 114.0
2502 Female, age 75, unknown 113.6
Periaquaductal grey, dorsal
nTPM: 109.1
1831 Male, age 72, unknown 114.2
2464 Female, age 72, unknown 111.4
1840 Male, age 53, unknown 106.3
2850 Male, age 76, both hemispheres 104.5
Periaquaductal grey, lateral
nTPM: 108.0
2272 Male, age 74, both hemispheres 109.1
2053 Male, age 18, unknown 108.3
2140 Male, age 76, both hemispheres 106.4
Pretectal area
nTPM: 118.9
2007 Male, age 72, unknown 130.3
1816 Male, age 51, unknown 130.2
1817 Female, age 42, unknown 129.6
1944 Female, age 72, unknown 127.5
1815 Male, age 53, unknown 121.7
2667 Female, age 75, unknown 121.3
2316 Male, age 76, right hemisphere 111.3
2273 Male, age 74, both hemispheres 110.4
2224 Female, age 72, unknown 110.1
2825 Male, age 18, unknown 109.4
2407 Male, age 75, both hemispheres 105.7
Red nucleus
nTPM: 124.8
2503 Female, age 72, unknown 134.0
2588 Male, age 74, left hemisphere 127.6
1821 Female, age 72, unknown 126.8
1954 Female, age 42, unknown 126.7
2785 Male, age 18, unknown 126.0
2769 Male, age 72, unknown 124.4
1904 Male, age 53, unknown 124.3
1865 Male, age 51, unknown 123.7
2227 Male, age 72, unknown 123.4
2823 Male, age 76, right hemisphere 122.9
2725 Female, age 75, unknown 122.4
2584 Male, age 75, left hemisphere 115.9
Substantia nigra
nTPM: 117.8
1851 Male, age 51, unknown 125.7
1889 Female, age 72, unknown 124.7
1916 Female, age 42, unknown 124.0
2699 Male, age 18, unknown 117.6
2409 Female, age 72, unknown 116.9
2665 Male, age 74, both hemispheres 116.0
1941 Male, age 53, unknown 115.7
2590 Female, age 75, unknown 114.1
2583 Male, age 75, right hemisphere 112.7
2241 Male, age 72, unknown 110.5
Superior colliculus
nTPM: 116.5
2087 Female, age 72, unknown 125.1
1913 Female, age 42, unknown 122.3
2668 Female, age 75, unknown 119.7
1796 Male, age 53, unknown 119.1
2261 Male, age 18, unknown 117.9
1995 Male, age 72, unknown 116.0
1895 Male, age 76, right hemisphere 115.5
2587 Male, age 74, left hemisphere 113.3
2664 Male, age 75, both hemispheres 109.0
1839 Male, age 51, unknown 107.6
Ventral tegmental area
nTPM: 117.9
1915 Female, age 42, unknown 122.7
2410 Female, age 72, unknown 121.0
2223 Female, age 72, unknown 119.0
2218 Male, age 76, both hemispheres 118.3
1942 Male, age 51, unknown 116.6
2021 Male, age 53, unknown 109.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 181.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 181.8
Samples: 139

Max nTPM: 428.9
Min nTPM: 71.8
Std nTPM: 48.7
Median nTPM: 172.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 428.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 416.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 301.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 291.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 289.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 288.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 285.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 266.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 255.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 255.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 239.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.1
FF:10158-103A5 76 years, female 76.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.1
Pig sample Sample description nTPM
Midbrain
nTPM: 83.9
Samples: 4

Max nTPM: 117.9
Min nTPM: 52.6
Sample A Female 117.9
Sample B Female 87.3
Sample C Male 77.8
Sample D Male 52.6
Periaqueductal gray
nTPM: 68.6
Samples: 3

Max nTPM: 77.9
Min nTPM: 55.0
Sample B Female 72.9
Sample C Male 77.9
Sample D Male 55.0
Substantia nigra
nTPM: 81.0
Samples: 4

Max nTPM: 107.2
Min nTPM: 62.8
Sample A Female 107.2
Sample B Female 62.8
Sample C Male 90.9
Sample D Male 63.2
Superior colliculi
nTPM: 84.1
Samples: 4

Max nTPM: 98.6
Min nTPM: 72.4
Sample A Female 98.6
Sample B Female 75.1
Sample C Male 90.3
Sample D Male 72.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 94.4
Min nTPM: 70.0
Sample A Male 94.4
Sample B Male 70.0
Sample C Female 73.9
Sample D Female 87.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
69262325 Antisense, RP_050303_02_A06, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.